Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene190093 SustainPine v3.0 450
• AutoFact: Ribosomal protein L20 [Arabidopsis thaliana] gb|AAM63502.1| ribosomal protein L20, putative [Arabidopsis thaliana] gb|ABD38912.1| At1g16740 [Arabidopsis thaliana] gb|AEE29491.1| Ribosomal protein L20 [Arabidopsis thaliana] 9.0e-21
• FL-Next: sp=50S ribosomal protein L20; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 50S ribosomal protein L20 8.246e-21
Putative Complete
sp_v3.0_unigene190190 SustainPine v3.0 397
• AutoFact: GRP multi-domain protein 2.0e-11
• Sma3: Putative glycine rich protein 6.261e-22
coding
sp_v3.0_unigene190358 SustainPine v3.0 314
• AutoFact: Ribosomal protein S2 n=2 Tax=Chlamydomonadales RepID=A8HME4_CHLRE 9.99967e-42
• FL-Next: tr=40S ribosomal protein S2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: 40S ribosomal protein S2 2.121e-19
Internal
sp_v3.0_unigene190381 SustainPine v3.0 444
• AutoFact: Ribosomal protein S2 n=3 Tax=Endopterygota RepID=Q56FF2_LYSTE 0.0
• FL-Next: tr=40S ribosomal protein S2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: 40S ribosomal protein S2 2.121e-19
C-terminus
sp_v3.0_unigene190453 SustainPine v3.0 360
• AutoFact: Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SBS3_PHYPA 7.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pre-mRNA branch site p14-like protein 6.096e-09
N-terminus
sp_v3.0_unigene190468 SustainPine v3.0 325
• AutoFact: Heat shock protein 90 (Fragment) n=1 Tax=Chromera velia RepID=D9J1W2_9ALVE 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heat shock protein 90 8.464e-30
C-terminus
sp_v3.0_unigene190483 SustainPine v3.0 473
• AutoFact: Cold shock protein n=1 Tax=Bermanella marisrubri RepID=Q1N1Z0_9GAMM 7.0e-18
• FL-Next: tr=Cold shock domain containing proteins, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Glycine-rich protein 2b 2.893e-08
Complete
sp_v3.0_unigene190534 SustainPine v3.0 182
• AutoFact: 40S ribosomal protein S3 n=1 Tax=Dictyostelium fasciculatum RepID=F4Q7T4_9MYCE 1.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene190639 SustainPine v3.0 365
• AutoFact: Eukaryotic initiation factor 4A-III n=1 Tax=Caligus clemensi RepID=C1C237_9MAXI 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 9.226e-09
N-terminus
sp_v3.0_unigene190854 SustainPine v3.0 393
• AutoFact: Splicing factor U2af 38 kDa subunit n=1 Tax=Salpingoeca sp. ATCC 50818 RepID=F2UL33_9EUKA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.461e-11
Internal
sp_v3.0_unigene190884 SustainPine v3.0 336
• AutoFact: F6N18.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LPK1_ARATH 9.0e-31
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Copia-type polyprotein 1.692e-10
Putative C-terminus
sp_v3.0_unigene190934 SustainPine v3.0 333
• AutoFact: OSJNBa0053B21.11 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XKR0_ORYSJ 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Os08g0344700 protein 8.772e-06
Internal
sp_v3.0_unigene191014 SustainPine v3.0 400
• AutoFact: tobacco fibrillarin homolog [Nicotiana tabacum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Fibrillarin, putative 1.165e-08
Internal
sp_v3.0_unigene191015 SustainPine v3.0 795
• AutoFact: Obg-like ATPase 1 n=2 Tax=Protacanthopterygii RepID=C0H944_SALSA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GTP-binding protein 4.646e-06
C-terminus
sp_v3.0_unigene191101 SustainPine v3.0 421
• AutoFact: Ribosomal protein S18, component of cytosolic 80S ribosome and 40S small subunit n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4SBF6_OSTLU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S18 8.32e-12
Putative Complete
sp_v3.0_unigene191246 SustainPine v3.0 483
• AutoFact: Eukaryotic initiation factor 4A-III, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0N6A8_PHYIT 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 3.282e-09
C-terminus
sp_v3.0_unigene191383 SustainPine v3.0 534
• AutoFact: Probable eukaryotic initiation factor 4A n=5 Tax=Trypanosoma RepID=IF4A_TRYBB 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 2 4.041e-08
C-terminus
sp_v3.0_unigene191931 SustainPine v3.0 491
• AutoFact: myc-regulated DEAD/H box 18 RNA helicase-like (ISS) [Ostreococcus tauri] emb|CAL55333.1| myc-regulated DEAD/H box 18 RNA helicase-like (ISS) [Ostreococcus tauri] 8.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene191986 SustainPine v3.0 477
• AutoFact: 40S ribosomal protein S2 putative n=1 Tax=Albugo laibachii Nc14 RepID=F0W5G8_9STRA 1.0e-30
• FL-Next: tr=40S ribosomal protein S2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: 40S ribosomal protein S2 4.256e-15
C-terminus
sp_v3.0_unigene192121 SustainPine v3.0 458
• AutoFact: PREDICTED: similar to GL19160 isoform 1 n=2 Tax=Ciona intestinalis RepID=UPI00006A5B0C 6.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.31e-13
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain