Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene188938 SustainPine v3.0 484
• AutoFact: 60S ribosomal protein L10A n=3 Tax=Neoptera RepID=D1FPL3_CIMLE 8.0e-35
• FL-Next: sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein L1 9.837e-36
C-terminus
sp_v3.0_unigene188997 SustainPine v3.0 606
• AutoFact: Phosphoinositide 3-kinase n=1 Tax=Nicotiana tabacum RepID=Q4QXM0_TOBAC 0.0
• FL-Next: sp=Phosphatidylinositol 3-kinase VPS34; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Phosphatidylinositol 3-kinase 1.293e-14
C-terminus
sp_v3.0_unigene189060 SustainPine v3.0 681
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 5.0e-07
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Putative Complete
sp_v3.0_unigene189071 SustainPine v3.0 286
• AutoFact: 30S ribosomal protein S13 n=3 Tax=cellular organisms RepID=RS13_FLAJ1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 30S ribosomal protein S13, chloroplastic 2.428e-18
Putative C-terminus
sp_v3.0_unigene189093 SustainPine v3.0 951
• AutoFact: rve domain containing protein 5.0e-23
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene189201 SustainPine v3.0 466
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZS5_ORYSJ 1.0e-34
• FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
Internal
sp_v3.0_unigene189341 SustainPine v3.0 377
• AutoFact: Ribosomal protein S3 n=4 Tax=Pinaceae RepID=D2DWH7_9CONI 1.0e-05
• FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
• Sma3: Ribosomal protein S3 3.125e-39
Internal
sp_v3.0_unigene189430 SustainPine v3.0 299
• AutoFact: Putative retroelement n=1 Tax=Oryza sativa Japonica Group RepID=Q8H7X6_ORYSJ 1.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.72e-16
Putative Complete
sp_v3.0_unigene189509 SustainPine v3.0 514
• AutoFact: Putative ribosomal protein S4 (Fragment) n=1 Tax=Barentsia elongata RepID=A8UAC7_9BILA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 4.563e-24
Putative C-terminus
sp_v3.0_unigene189554 SustainPine v3.0 585
• AutoFact: F8L10.3 protein n=2 Tax=Arabidopsis thaliana RepID=Q9LNN6_ARATH 8.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene189619 SustainPine v3.0 420
• AutoFact: Nucleotid_trans domain containing protein 4.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative regulatory protein 7.196e-09
Internal
sp_v3.0_unigene189625 SustainPine v3.0 602
• AutoFact: Small nuclear ribonucleoprotein F n=3 Tax=Pleosporineae RepID=B2VQW0_PYRTR 2.8026e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene189712 SustainPine v3.0 367
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 6.0e-36
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 3.533e-23
Internal
sp_v3.0_unigene189801 SustainPine v3.0 229
• AutoFact: tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] dbj|BAC42190.1| unknown protein [Arabidopsis thaliana] gb|ABD85155.1| At4g38020 [Arabidopsis thaliana] gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis t 5.0e-06
• FL-Next: tr=tRNA/rRNA methyltransferase family protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
• Sma3: Putative uncharacterized protein F20D10.140 8.285e-06
C-terminus
sp_v3.0_unigene189843 SustainPine v3.0 685
• AutoFact: 40S ribosomal protein S4 n=4 Tax=Obtectomera RepID=RS4_BOMMO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S4 4.456e-24
C-terminus
sp_v3.0_unigene189878 SustainPine v3.0 772
• AutoFact: 40S ribosomal protein S3 [Gallus gallus] emb|CAG32172.1| hypothetical protein RCJMB04_19g1 [Gallus gallus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S3 1.29e-10
Complete
sp_v3.0_unigene189881 SustainPine v3.0 346
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 2.0e-36
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 9.588e-20
Putative C-terminus
sp_v3.0_unigene189889 SustainPine v3.0 495
• AutoFact: RVT_1 domain containing protein 2.0e-15
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 8.173e-15
C-terminus
sp_v3.0_unigene189926 SustainPine v3.0 177
• AutoFact: Gly_rich multi-domain protein 1.0e-09
unknown
sp_v3.0_unigene190092 SustainPine v3.0 411
• AutoFact: ribosomal protein S20 [Chlamys farreri] 0.0
• FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
• Sma3: 40S ribosomal protein S20 1.317e-14
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain