Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, RING-type

Term: IPR001841  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene3571 SustainPine v3.0 2245
AutoFact: cohesin loading factor subunit SCC2 [Arabidopsis thaliana] gb|ABQ12620.1| sister chromatid cohesion 2 [Arabidopsis thaliana] gb|AED92174.1| cohesin loading factor subunit SCC2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene3601 SustainPine v3.0 1865
AutoFact: chromatin remodeling 5 [Arabidopsis thaliana] gb|AEC06230.1| chromatin remodeling 5 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 6.666e-34
Putative Complete
sp_v3.0_unigene3623 SustainPine v3.0 1354
AutoFact: seven in absentia-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
C-terminus
sp_v3.0_unigene3680 SustainPine v3.0 4476
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SLY6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative zinc finger protein 2.475e-09
Complete
sp_v3.0_unigene3692 SustainPine v3.0 2203
AutoFact: DUF616 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: EMB2756 3.176e-13
N-terminus
sp_v3.0_unigene3721 SustainPine v3.0 1329
AutoFact: Zinc finger, RING-type [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative RING zinc finger protein 4.389e-06
C-terminus
sp_v3.0_unigene3757 SustainPine v3.0 3511
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RRE2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 6.895e-24
Complete
sp_v3.0_unigene3794 SustainPine v3.0 2975
AutoFact: human Mi-2 autoantigen-like protein [Arabidopsis thaliana] dbj|BAB08833.1| helicase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 family DNA-dependent ATPase 5.211e-11
Putative Complete
sp_v3.0_unigene3829 SustainPine v3.0 1846
AutoFact: putative methyltransferase domain-containing protein [Arabidopsis thaliana] emb|CAB80933.1| hypothetical protein [Arabidopsis thaliana] gb|AEE81998.1| putative methyltransferase domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATRAD3, putative 1.636e-17
Complete
sp_v3.0_unigene3935 SustainPine v3.0 4389
AutoFact: Cellulose synthase n=1 Tax=Pinus radiata RepID=Q4VWW7_PINRA 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Sma3: Cellulose synthase 0.0
Complete
sp_v3.0_unigene4035 SustainPine v3.0 1217
AutoFact: RING-H2 subgroup RHE protein [Populus tremula x Populus alba] 8.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene4039 SustainPine v3.0 3267
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974832.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAM97093.1| RING finger-like protein [Arabidopsis thaliana] gb|AAT47817.1| At5g24870 [Arabidopsis thaliana] gb|AED9 2.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr7 scaffold_20, whole genome shotgun sequence 1.669e-06
Complete
sp_v3.0_unigene4072 SustainPine v3.0 2796
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RVW9_RICCO 0.0
FL-Next: tr=Protein binding protein, putative; Ricinus communis (Castor bean). 0.0
Complete
sp_v3.0_unigene4075 SustainPine v3.0 1942
AutoFact: [R] COG2319 FOG: WD40 repeat 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 1.052e-13
C-terminus
sp_v3.0_unigene4100 SustainPine v3.0 1421
AutoFact: Abscisic acid receptor PYL4 n=2 Tax=Arabidopsis RepID=PYL4_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Bet v I allergen-like 8.553e-18
Complete
sp_v3.0_unigene4104 SustainPine v3.0 918
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974832.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAM97093.1| RING finger-like protein [Arabidopsis thaliana] gb|AAT47817.1| At5g24870 [Arabidopsis thaliana] gb|AED9 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zinc finger, C3HC4 type family protein 4.906e-07
C-terminus
sp_v3.0_unigene4107 SustainPine v3.0 1542
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974448.1| RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001030874.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAK76657.1| unknown protein [Arabid 7.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RHC1A 2.202e-07
Complete
sp_v3.0_unigene4112 SustainPine v3.0 2073
AutoFact: binding / protein binding / zinc ion binding 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Putative C-terminus
sp_v3.0_unigene4113 SustainPine v3.0 2221
AutoFact: splicing factor, arginine/serine-rich 2,rnap interacting protein, putative 1.4013e-45
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene4133 SustainPine v3.0 2229
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9R8B0_RICCO 0.0
FL-Next: sp=E3 ubiquitin-protein ligase CIP8; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain