Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: RNA helicase, DEAD-box type, Q motif

Term: IPR014014  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene162623 SustainPine v3.0 411
AutoFact: DEAD-box ATP-dependent RNA helicase 20 n=3 Tax=Poaceae RepID=RH20_ORYSJ 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 30 1.687e-08
Putative N-terminus
sp_v3.0_unigene163318 SustainPine v3.0 404
AutoFact: DEAD-box ATP-dependent RNA helicase 56 n=2 Tax=Arabidopsis thaliana RepID=F4JWF6_ARATH 5.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene164118 SustainPine v3.0 338
AutoFact: RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A; AltName: Full=ATP-dependent RNA helicase eIF4A 7.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: eIF-4A-3 7.595e-08
N-terminus
sp_v3.0_unigene164698 SustainPine v3.0 324
AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 32 dbj|BAC83715.1| putative RNA helicase [Oryza sativa Japonica Group] dbj|BAD31318.1| putative RNA helicase [Oryza sativa Japonica Group] 8.0e-06
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 32; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene164732 SustainPine v3.0 166
AutoFact: DEAD-box ATP-dependent RNA helicase 16 [Arabidopsis thaliana] sp|Q9SW44.1|RH16_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 16 emb|CAB45452.1| RNA helicase (RH16) [Arabidopsis thaliana] emb|CAB80208.1| RNA helicase (RH16) [Arabidopsis thaliana] 6.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 16 4.425e-09
Internal
sp_v3.0_unigene165378 SustainPine v3.0 146
AutoFact: putative ATP-dependent RNA helicase [Oryza sativa] 1.0e-06
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 17; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene166387 SustainPine v3.0 451
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZU8_ORYSJ 3.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Polyprotein, putative 1.953e-06
N-terminus
sp_v3.0_unigene169019 SustainPine v3.0 271
AutoFact: Gly_rich multi-domain protein 7.0e-17
Sma3: Glycine-rich RNA-binding protein 2.56e-14
coding
sp_v3.0_unigene169684 SustainPine v3.0 327
AutoFact: GRP multi-domain protein 3.0e-16
Sma3: Glycine-rich protein 2.897e-16
coding
sp_v3.0_unigene170028 SustainPine v3.0 603
AutoFact: Tymo_45kd_70kd multi-domain protein 5.0e-05
coding
sp_v3.0_unigene170036 SustainPine v3.0 237
AutoFact: GRP multi-domain protein 1.0e-10
Sma3: Putative glycine-rich protein 2.016e-08
coding
sp_v3.0_unigene171148 SustainPine v3.0 336
AutoFact: GRP multi-domain protein 9.0e-09
coding
sp_v3.0_unigene171386 SustainPine v3.0 283
AutoFact: Herpes_gp2 multi-domain protein 2.0e-14
Sma3: Glycine-rich protein 9.342e-12
coding
sp_v3.0_unigene171933 SustainPine v3.0 418
AutoFact: DUF1777 multi-domain protein 7.0e-10
Sma3: ATP-dependent RNA helicase DDX23 2.447e-09
coding
sp_v3.0_unigene172075 SustainPine v3.0 216
AutoFact: TT_ORF1 multi-domain protein 3.0e-10
coding
sp_v3.0_unigene174162 SustainPine v3.0 217
AutoFact: FAP multi-domain protein 4.0e-09
Sma3: Glycine-rich protein 7.343e-09
coding
sp_v3.0_unigene182866 SustainPine v3.0 941
AutoFact: GRP domain containing protein 1.0e-05
Sma3: DEAD-box ATP-dependent RNA helicase 37 2.985e-08
coding
sp_v3.0_unigene184477 SustainPine v3.0 473
AutoFact: dead-box helicase [Platanus x acerifolia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 1.77e-21
Putative C-terminus
sp_v3.0_unigene187950 SustainPine v3.0 291
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO 1.0e-14
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 45; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 45 6.271e-09
C-terminus
sp_v3.0_unigene190190 SustainPine v3.0 397
AutoFact: GRP multi-domain protein 2.0e-11
Sma3: Putative glycine rich protein 6.261e-22
coding

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain