Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: DNA/RNA helicase, DEAD/DEAH box type, N-terminal

Term: IPR011545  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene64421 SustainPine v3.0 110
AutoFact: DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana] sp|O22907.2|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24 gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana] gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidop 1.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 24 3.506e-09
Internal
sp_v3.0_unigene64467 SustainPine v3.0 149
AutoFact: Dicer-like protein 4 n=3 Tax=Arabidopsis RepID=DCL4_ARATH 1.0e-10
FL-Next: sp=Dicer-like protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Dicer-like 4 3.861e-09
Internal
sp_v3.0_unigene64589 SustainPine v3.0 235
AutoFact: RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza 5.0e-08
FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene65149 SustainPine v3.0 190
AutoFact: Putative polyprotein n=2 Tax=Oryza sativa Japonica Group RepID=Q851Y3_ORYSJ 9.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.825e-11
Putative N-terminus
sp_v3.0_unigene65726 SustainPine v3.0 140
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene66066 SustainPine v3.0 396
AutoFact: P72 DEAD box protein [Pisum sativum] 6.0e-06
FL-Next: Isoform 3 of DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 0.0
Internal
sp_v3.0_unigene66075 SustainPine v3.0 484
AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene66458 SustainPine v3.0 349
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 45 5.379e-09
Internal
sp_v3.0_unigene66676 SustainPine v3.0 402
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06244.1| pentatricopeptide repe 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 9.43e-23
Internal
sp_v3.0_unigene67133 SustainPine v3.0 202
AutoFact: putative helicase [Oryza sativa Japonica Group] 4.0e-08
FL-Next: tr=ATP-dependent RNA helicase, putative; Ricinus communis (Castor bean). 0.0
Putative C-terminus
sp_v3.0_unigene67173 SustainPine v3.0 281
AutoFact: Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO 3.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicer-like 3 9.643e-09
Internal
sp_v3.0_unigene67577 SustainPine v3.0 155
AutoFact: putative DEAD-box ATP-dependent RNA helicase 33 [Arabidopsis thaliana] sp|O80792.1|RH33_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 33 gb|AAC26676.1| putative RNA helicase [Arabidopsis thaliana] gb|AEC06130.1| putative DEAD-box ATP-de 2.0e-08
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 48; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene68057 SustainPine v3.0 131
AutoFact: Putative ATP-dependent RNA helicase n=1 Tax=Oryza sativa RepID=Q9FW67_ORYSA 5.0e-11
FL-Next: tr=ATP-dependent RNA helicase Dhx29; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Sma3: ATP-dependent RNA helicase, putative 4.01e-12
Internal
sp_v3.0_unigene68265 SustainPine v3.0 227
AutoFact: DEAD-box ATP-dependent RNA helicase 42 n=3 Tax=Arabidopsis RepID=RH42_ARATH 2.0e-11
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 42; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 45 9.358e-09
Internal
sp_v3.0_unigene68688 SustainPine v3.0 153
AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 8.0e-17
FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene69203 SustainPine v3.0 278
AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 1.0e-32
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene69546 SustainPine v3.0 203
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S4I3_RICCO 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 57 4.49e-09
Internal
sp_v3.0_unigene70042 SustainPine v3.0 489
AutoFact: Tetratricopeptide repeat, putative [Oryza sativa Japonica Group] 5.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 1.632e-11
Internal
sp_v3.0_unigene70624 SustainPine v3.0 396
AutoFact: Pentatricopeptide repeat protein 65 n=2 Tax=Funariaceae RepID=F5CAD8_FUNHY 5.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 1.189e-16
Internal
sp_v3.0_unigene71849 SustainPine v3.0 269
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain