Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Helicase, C-terminal

Term: IPR001650  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene8692 SustainPine v3.0 1378
• AutoFact: Polyketide_cyc2 domain containing protein 3.0e-09
• FL-Next: sp=Abscisic acid receptor PYL8; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Bet v I allergen-like 1.028e-21
Complete
sp_v3.0_unigene8717 SustainPine v3.0 1124
• AutoFact: ATP-dependent RNA and DNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SEF1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene8738 SustainPine v3.0 3010
• AutoFact: Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 n=3 Tax=Arabidopsis RepID=SM3L1_ARATH 0.0
• FL-Next: tr=SNF2 domain-containing protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
• Sma3: Chromatin remodeling complex subunit 2.356e-11
Complete
sp_v3.0_unigene9004 SustainPine v3.0 657
• AutoFact: Herpes_gp2 multi-domain protein 2.0e-13
coding
sp_v3.0_unigene9051 SustainPine v3.0 1392
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SW84_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 45 2.29e-08
C-terminus
sp_v3.0_unigene9288 SustainPine v3.0 1973
• AutoFact: protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb|AEC08442.1| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 8.102e-14
N-terminus
sp_v3.0_unigene9305 SustainPine v3.0 218
• AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9HYI3_POPTR 3.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 2.962e-07
Internal
sp_v3.0_unigene9534 SustainPine v3.0 2356
• AutoFact: pfam00270, DEAD, DEAD/DEAH box helicase 0.0
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 10; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene9693 SustainPine v3.0 1206
• AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9H8P5_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene9777 SustainPine v3.0 721
• AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DsRNA-specific nuclease dicer and related ribonuclease 5.117e-08
Internal
sp_v3.0_unigene9791 SustainPine v3.0 1034
• AutoFact: putative ethylene-responsive RNA helicase [Oryza sativa Japonica Group] 5.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 30 3.81e-08
Putative C-terminus
sp_v3.0_unigene9944 SustainPine v3.0 309
• AutoFact: DUF3535 domain containing protein 4.0e-12
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene10012 SustainPine v3.0 466
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9S033_RICCO 0.0
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 50; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 50 2.694e-09
Internal
sp_v3.0_unigene10080 SustainPine v3.0 970
• AutoFact: DUF3535 domain containing protein 0.0001
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: SNF2 super family 2.192e-06
Internal
sp_v3.0_unigene10374 SustainPine v3.0 924
• AutoFact: Abscisic acid receptor PYR1 n=1 Tax=Fragaria x ananassa RepID=F2YHU9_FRAAN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AT-rich element binding factor 3 4.978e-16
Complete
sp_v3.0_unigene10613 SustainPine v3.0 1512
• AutoFact: F-box protein [Arabidopsis thaliana] sp|Q9M1I1.1|FB304_ARATH RecName: Full=F-box protein At3g54460 emb|CAB77566.1| RING finger-like protein [Arabidopsis thaliana] gb|AAM13867.1| unknown protein [Arabidopsis thaliana] gb|AAO42330.1| unknown protein [Arabid 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene11467 SustainPine v3.0 1311
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RC60_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene11568 SustainPine v3.0 730
• AutoFact: Abscisic acid receptor PYL4 n=2 Tax=Arabidopsis RepID=PYL4_ARATH 2.0e-34
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Bet v I allergen-like 3.221e-14
N-terminus
sp_v3.0_unigene11662 SustainPine v3.0 1186
• AutoFact: putative AP2/EREBP transcription factor [Arabidopsis thaliana] 2.0e-16
• FL-Next: sp=Ethylene-responsive transcription factor ABI4; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: AP2/ERF domain-containing transcription factor 7.199e-28
Complete
sp_v3.0_unigene11797 SustainPine v3.0 1534
• AutoFact: pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport 2.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AT-rich element binding factor 3 4.478e-16
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain