Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Helicase, C-terminal

Term: IPR001650  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene23914 SustainPine v3.0 2102
AutoFact: DEAD-box ATP-dependent RNA helicase 5 n=2 Tax=Oryza sativa RepID=RH5_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 2.49e-22
Complete
sp_v3.0_unigene24027 SustainPine v3.0 1357
AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] gb|AAL67014.1| putative RNA helicase [Arabidopsis thaliana] gb|AAM91806.1| putative RNA helicase [Arabidopsis thaliana] gb|AEE31492.1| pre-mRNA-splicing factor ATP-dependent 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent RNA helicase, putative 6.004e-20
Putative C-terminus
sp_v3.0_unigene24065 SustainPine v3.0 3485
AutoFact: PREDICTED: similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI00019843BD 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: DNA repair helicase rad5,16, putative 1.361e-07
Complete
sp_v3.0_unigene24607 SustainPine v3.0 475
AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I5Q4_POPTR 6.0e-06
FL-Next: tr=Putative uncharacterized protein; subsp. trichocarpa). 0.0
N-terminus
sp_v3.0_unigene24692 SustainPine v3.0 1463
AutoFact: putative transcriptional regulator [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SWR1 complex protein, SNF2 family DNA-dependent ATPase 2.319e-08
C-terminus
sp_v3.0_unigene24779 SustainPine v3.0 2218
AutoFact: chromodomain helicase DNA binding protein, putative (EC:2.7.11.1); K11367 chromodomain-helicase-DNA-binding protein 1 [EC:3.6.1.-] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene26206 SustainPine v3.0 635
AutoFact: DEAD box helicase n=1 Tax=Ectocarpus siliculosus RepID=D7FYP9_ECTSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 10 6.141e-08
C-terminus
sp_v3.0_unigene26595 SustainPine v3.0 1028
AutoFact: Cytochrome c oxidase subunit 5C n=8 Tax=Poaceae RepID=COX5C_ORYSJ 3.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cytochrome c oxidase subunit 5C-2 5.743e-09
Complete
sp_v3.0_unigene27131 SustainPine v3.0 2097
AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Aspartyl-tRNA synthetase, putative 2.487e-09
Complete
sp_v3.0_unigene27971 SustainPine v3.0 2344
AutoFact: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] emb|CAB87691.1| putative protein [Arabidopsis thaliana] gb|AAM13183.1| putative protein [Arabidopsis thaliana] gb|AAP68292.1| At5g11730 [Arabidopsis thaliana 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein At2g19160 4.041e-08
Complete
sp_v3.0_unigene28415 SustainPine v3.0 1476
AutoFact: PREDICTED: similar to ATP-dependent helicase n=1 Tax=Vitis vinifera RepID=UPI00019836E3 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
N-terminus
sp_v3.0_unigene28601 SustainPine v3.0 342
AutoFact: putative transcriptional regulator [Arabidopsis thaliana] 9.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene28705 SustainPine v3.0 2223
AutoFact: AP2 domain-containing transcription factor 7 n=1 Tax=Glycine max RepID=C9WA65_SOYBN 2.0e-31
FL-Next: tr=DREB protein; Taxus cuspidata (Japanese yew). 0.0
Sma3: Dehydration responsive element binding protein 1.069e-24
Putative Complete
sp_v3.0_unigene28912 SustainPine v3.0 2177
AutoFact: SPFH/Band 7/PHB domain-containing membrane-associated protein [Arabidopsis thaliana] gb|AAK59431.1| unknown protein [Arabidopsis thaliana] gb|AAL15215.1| unknown protein [Arabidopsis thaliana] gb|AAM63260.1| stomatin-like protein [Arabidopsis thaliana] db 0.0
FL-Next: sp=Hypersensitive-induced response protein 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Stomatin-like protein 1.056e-13
Complete
sp_v3.0_unigene28919 SustainPine v3.0 2232
AutoFact: DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana] sp|P93008.1|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21 gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase [Arabidopsis thaliana] gb|AAL38370.1| put 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Predicted protein 0.0
Complete
sp_v3.0_unigene28941 SustainPine v3.0 642
AutoFact: putative helicase [Oryza sativa Japonica Group] 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene29080 SustainPine v3.0 311
AutoFact: Probable DEAD-box ATP-dependent RNA helicase 48 n=3 Tax=Arabidopsis RepID=RH48_ARATH 2.0e-15
FL-Next: sp=Probable DEAD-box ATP-dependent RNA helicase 48; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene29155 SustainPine v3.0 1885
AutoFact: ATP-dependent RNA helicase like protein [Arabidopsis thaliana] emb|CAB78627.1| ATP-dependent RNA helicase like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 1 6.773e-09
C-terminus
sp_v3.0_unigene29272 SustainPine v3.0 729
AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 6.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 1.359e-29
Putative C-terminus
sp_v3.0_unigene29807 SustainPine v3.0 1123
AutoFact: Abscisic acid receptor PYL4 n=2 Tax=Arabidopsis RepID=PYL4_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Bet v I allergen-like 8.553e-18
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain