Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene27131 SustainPine v3.0 2097
• AutoFact: asparaginyl-tRNA synthetase, cytoplasmic 1 [Arabidopsis thaliana] sp|Q9SW96.1|SYNC1_ARATH RecName: Full=Asparaginyl-tRNA synthetase, cytoplasmic 1; AltName: Full=Asparagine--tRNA ligase 1; Short=AsnRS 1; AltName: Full=Protein EMBRYO DEFECTIVE 2755 gb|AAD4 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Aspartyl-tRNA synthetase, putative 2.487e-09
Complete
sp_v3.0_unigene27194 SustainPine v3.0 705
• AutoFact: 50S ribosomal protein L2 n=6 Tax=cellular organisms RepID=RL2_FLAJ1 0.0
• FL-Next: sp=30S ribosomal protein S19, chloroplastic; Pinus aristata. Plastid; Chloroplast. 0.0
• Sma3: 50S ribosomal protein L2, chloroplastic 0.0
Putative Complete
sp_v3.0_unigene27472 SustainPine v3.0 1055
• AutoFact: putative ribosomal S1 protein (with alternative splicing) [Oryza sativa Japonica Group] gb|ABF99860.1| S1 RNA binding domain containing protein, expressed [Oryza sativa Japonica Group] gb|EEC76515.1| hypothetical protein OsI_14295 [Oryza sativa Indica Gro 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene27665 SustainPine v3.0 721
• AutoFact: Pectinesterase n=1 Tax=Picea sitchensis RepID=A9P2L6_PICSI 0.0
• FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectinesterase 0.0
C-terminus
sp_v3.0_unigene28016 SustainPine v3.0 525
• AutoFact: 30S ribosomal protein S12 n=5 Tax=Flavobacteriales RepID=C7M4E1_CAPOD 0.0
• FL-Next: sp=30S ribosomal protein S12, chloroplastic; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
• Sma3: 30S ribosomal protein S12, chloroplastic 0.0
Complete
sp_v3.0_unigene28498 SustainPine v3.0 673
• AutoFact: Ribosomal protein L2 n=1 Tax=Cycas taitungensis RepID=B0BLF2_CYCTA 1.0e-11
• FL-Next: sp=60S ribosomal protein L2, mitochondrial; Oryza sativa subsp. japonica (Rice). Mitochondrion. 0.0
• Sma3: Ribosomal protein L2 7.807e-19
Internal
sp_v3.0_unigene28560 SustainPine v3.0 722
• AutoFact: 40s ribosomal protein S15, putative n=1 Tax=Paramecium tetraurelia RepID=Q6BFE0_PARTE 2.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 5.98e-17
Putative Complete
sp_v3.0_unigene29296 SustainPine v3.0 887
• AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9RKG6_RICCO 4.0e-31
• FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectinesterase 0.0
C-terminus
sp_v3.0_unigene29360 SustainPine v3.0 693
• AutoFact: Protection of telomeres 1 protein n=1 Tax=Pinus taeda RepID=B7T1K4_PINTA 0.0
• FL-Next: tr=Protection of telomeres 1 protein; Pinus taeda (Loblolly pine). 0.0
• Sma3: Protection of telomeres 1 protein 3.317e-19
Internal
sp_v3.0_unigene29452 SustainPine v3.0 1385
• AutoFact: Eukaryotic translation initiation factor 5A 2 n=3 Tax=Picea RepID=Q3ZDK4_PICAB 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene29649 SustainPine v3.0 789
• AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 4.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene29652 SustainPine v3.0 862
• AutoFact: Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene30102 SustainPine v3.0 950
• AutoFact: Drf_FH1 multi-domain protein 1.0e-21
• Sma3: Glycine-rich protein 4.83e-14
coding
sp_v3.0_unigene30108 SustainPine v3.0 1010
• AutoFact: Translation initiation factor n=4 Tax=Magnoliophyta RepID=B5M1Y2_RHEAU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene30351 SustainPine v3.0 1143
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene30528 SustainPine v3.0 574
• AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 8.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S28e 9.483e-13
Putative Complete
sp_v3.0_unigene30581 SustainPine v3.0 1014
• AutoFact: 30S ribosomal protein S17, putative n=1 Tax=Ricinus communis RepID=B9RQK5_RICCO 1.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene30960 SustainPine v3.0 537
• AutoFact: putative ribosomal protein S11 [Maconellicoccus hirsutus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 5.115e-28
Complete
sp_v3.0_unigene30976 SustainPine v3.0 530
• AutoFact: 40S ribosomal protein S12P, putative n=3 Tax=Piroplasmida RepID=A7AM80_BABBO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S23 1.975e-10
Complete
sp_v3.0_unigene31038 SustainPine v3.0 664
• AutoFact: Eukaryotic translation initiation factor 5A n=2 Tax=Caligus RepID=C1BMM4_9MAXI 0.0
• FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 3.437e-28
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain