Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene23100 SustainPine v3.0 3123
• AutoFact: aspartyl-tRNA synthetase [Arabidopsis thaliana] ref|NP_194847.3| aspartyl-tRNA synthetase [Arabidopsis thaliana] emb|CAB79836.1| aspartate--tRNA ligase-like protein [Arabidopsis thaliana] dbj|BAH20270.1| AT4G31180 [Arabidopsis thaliana] gb|AEE85872.1| asp 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene23107 SustainPine v3.0 1629
• AutoFact: putative kinesin [Oryza sativa Japonica Group] 7.0e-25
• FL-Next: sp=Kinesin-4; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene23353 SustainPine v3.0 846
• AutoFact: Pectinesterase n=1 Tax=Populus trichocarpa RepID=B9N5H3_POPTR 0.0
• FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectinesterase 0.0
C-terminus
sp_v3.0_unigene23422 SustainPine v3.0 550
• AutoFact: 40S ribosomal protein S11, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KXR1_9ALVE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 5.401e-28
Complete
sp_v3.0_unigene23787 SustainPine v3.0 3656
• AutoFact: kinesin 5 [Arabidopsis thaliana] gb|AEE82489.1| kinesin 5 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Kinesin heavy chain 5.316e-11
Complete
sp_v3.0_unigene23876 SustainPine v3.0 447
• AutoFact: 40S ribosomal protein S11, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KXR1_9ALVE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 4.333e-28
Putative Complete
sp_v3.0_unigene24017 SustainPine v3.0 536
• AutoFact: Pectinesterase n=1 Tax=Ricinus communis RepID=B9RKG6_RICCO 0.0
• FL-Next: sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pectinesterase 0.0
C-terminus
sp_v3.0_unigene24027 SustainPine v3.0 1357
• AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] gb|AAL67014.1| putative RNA helicase [Arabidopsis thaliana] gb|AAM91806.1| putative RNA helicase [Arabidopsis thaliana] gb|AEE31492.1| pre-mRNA-splicing factor ATP-dependent 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 6.004e-20
Putative C-terminus
sp_v3.0_unigene24056 SustainPine v3.0 1255
• AutoFact: OB-fold nucleic acid binding domain-containing protein [Arabidopsis thaliana] gb|AAC98030.1| ESTs gb|234051 and gb|F13722 come from this gene [Arabidopsis thaliana] gb|AAM62726.1| unknown [Arabidopsis thaliana] gb|AAO22770.1| unknown protein [Arabidopsis 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene24216 SustainPine v3.0 441
• AutoFact: Cold-shock DNA-binding domain protein n=1 Tax=Pseudomonas putida W619 RepID=B1JBH9_PSEPW 2.0e-25
• FL-Next: tr=Cold shock domain containing proteins, putative; Ricinus communis (Castor bean). 0.0
• Sma3: Cold shock domain containing proteins, putative 5.848e-06
Complete
sp_v3.0_unigene24258 SustainPine v3.0 331
• AutoFact: Putative 40S ribosomal protein S28 isoform 2 n=1 Tax=Spadella cephaloptera RepID=A8E6D0_9BILA 8.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S28e 8.826e-13
Complete
sp_v3.0_unigene25351 SustainPine v3.0 543
• AutoFact: 30S ribosomal protein S12 n=2 Tax=Pyrenophora RepID=B2WGH1_PYRTR 0.0
• FL-Next: sp=30S ribosomal protein S12, chloroplastic; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
• Sma3: Ribosomal protein S12 0.0
Putative Complete
sp_v3.0_unigene25946 SustainPine v3.0 389
• AutoFact: 40S ribosomal protein S11, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KXR1_9ALVE 1.96182e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S11 5.401e-28
C-terminus
sp_v3.0_unigene26002 SustainPine v3.0 1481
• AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] emb|CAB75817.1| putative protein [Arabidopsis thaliana] gb|AAK76594.1| unknown protein [Arabidopsis thaliana] gb|AAM44914.1| unknown protein [Arabidopsis thaliana] gb|AAM63861.1| unknown [A 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable methionyl-tRNA synthetase 1.599e-08
Complete
sp_v3.0_unigene26060 SustainPine v3.0 467
• AutoFact: Putative ribosomal protein S15 n=1 Tax=Maconellicoccus hirsutus RepID=A2I418_MACHI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 1.212e-16
Putative Complete
sp_v3.0_unigene26198 SustainPine v3.0 303
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 4.0e-24
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: RNA polymerase II subunit B7 1.214e-09
N-terminus
sp_v3.0_unigene26271 SustainPine v3.0 699
• AutoFact: Translation initiation factor 5A n=1 Tax=Glossina morsitans morsitans RepID=D3TMH0_GLOMM 0.0
• FL-Next: tr=Eukaryotic translation initiation factor 5A 2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Eukaryotic translation initiation factor 5A 5.035e-28
Complete
sp_v3.0_unigene26517 SustainPine v3.0 587
• AutoFact: Ribosomal protein S15 n=2 Tax=Branchiostoma RepID=Q6IV90_BRABE 4.2039e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 40S ribosomal protein S15 1.132e-16
Complete
sp_v3.0_unigene26552 SustainPine v3.0 374
• AutoFact: 40S ribosomal protein S28 n=22 Tax=Fungi/Metazoa group RepID=RS28_SCHPO 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribosomal protein S28e 9.483e-13
Complete
sp_v3.0_unigene26936 SustainPine v3.0 166
• AutoFact: RS11, ribosomal protein 11 40S small ribosomal subunit n=1 Tax=Thalassiosira pseudonana RepID=B8C1P3_THAPS 5.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain