Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Nucleic acid-binding, OB-fold

Term: IPR012340  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene205938 SustainPine v3.0 421
AutoFact: 40S ribosomal protein S23 n=1 Tax=Salmo salar RepID=C0H7K2_SALSA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S23 1.975e-10
Putative Complete
sp_v3.0_unigene206027 SustainPine v3.0 631
AutoFact: 40S ribosomal protein S23 n=32 Tax=leotiomyceta RepID=RS23_ASPFU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S23 1.975e-10
Complete
sp_v3.0_unigene206243 SustainPine v3.0 418
AutoFact: 40S ribosomal protein S23 n=1 Tax=Salmo salar RepID=C0H7K2_SALSA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S23 1.975e-10
Putative Complete
sp_v3.0_unigene206307 SustainPine v3.0 896
AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 3.0e-39
FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
Sma3: Ribosomal protein S3 0.0
C-terminus
sp_v3.0_unigene206440 SustainPine v3.0 490
AutoFact: Eukaryotic translation initiation factor 5A-1 n=5 Tax=core eudicotyledons RepID=IF5A1_ARATH 8.00001e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Eukaryotic translation initiation factor 5A 4.954e-28
Putative Complete
sp_v3.0_unigene206687 SustainPine v3.0 416
AutoFact: RNA polymerase n=1 Tax=Elaeis guineensis RepID=B3TLS5_ELAGV 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Os03g0845700 protein 9.26e-06
C-terminus
sp_v3.0_unigene207021 SustainPine v3.0 544
AutoFact: 40S ribosomal protein S23 n=32 Tax=leotiomyceta RepID=RS23_ASPFU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S23 1.975e-10
Complete
sp_v3.0_unigene207769 SustainPine v3.0 581
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 1.0e-13
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Cold shock domain protein 3 2.275e-08
C-terminus
sp_v3.0_unigene208047 SustainPine v3.0 224
AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S11 8.625e-11
N-terminus
sp_v3.0_unigene208368 SustainPine v3.0 147
AutoFact: Unassigned protein 2.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene208545 SustainPine v3.0 1074
AutoFact: Ribosomal protein S3 n=8 Tax=Pinaceae RepID=D2DWK4_9CONI 2.0e-33
FL-Next: tr=Ribosomal protein S3; Abies holophylla (Neddle fir) (Manchurian fir). Mitochondrion. 0.0
Sma3: Ribosomal protein S3 0.0
Putative N-terminus
sp_v3.0_unigene208550 SustainPine v3.0 571
AutoFact: RecName: Full=Probable methionyl-tRNA synthetase; AltName: Full=Methionine--tRNA ligase; Short=MetRS dbj|BAD61657.1| methionyl-tRNA synthetase [Oryza sativa Japonica Group] gb|EEE65790.1| hypothetical protein OsJ_21495 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable methionyl-tRNA synthetase 1.013e-08
Internal
sp_v3.0_unigene208556 SustainPine v3.0 740
AutoFact: putative RNA helicase [Oryza sativa Japonica Group] 6.0e-26
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative RNA helicase 1.97e-07
Putative Complete
sp_v3.0_unigene208861 SustainPine v3.0 149
AutoFact: RecName: Full=Probable methionyl-tRNA synthetase; AltName: Full=Methionine--tRNA ligase; Short=MetRS dbj|BAD61657.1| methionyl-tRNA synthetase [Oryza sativa Japonica Group] gb|EEE65790.1| hypothetical protein OsJ_21495 [Oryza sativa Japonica Group] 5.0e-17
FL-Next: sp=Probable methionine--tRNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Probable methionyl-tRNA synthetase 7.738e-09
Internal
sp_v3.0_unigene208920 SustainPine v3.0 227
AutoFact: S28 ribosomal protein (Fragment) n=1 Tax=Triticum aestivum RepID=Q7X9K4_WHEAT 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene209131 SustainPine v3.0 301
AutoFact: Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] gb|AAS76692.1| At4g18590 [Arabidopsis thaliana] gb|AAS88756.1| At4g18590 [Arabidopsis thaliana] gb|AEE84064.1| Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pollen-specific protein like 8.772e-06
N-terminus
sp_v3.0_unigene209274 SustainPine v3.0 329
AutoFact: ribosomal protein S15 [Argopecten irradians] 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S15 8.941e-17
Putative C-terminus
sp_v3.0_unigene209279 SustainPine v3.0 426
AutoFact: Translation initiation factor eIF5A n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K190_SCHJY 4.0e-31
FL-Next: tr=Eukaryotic translation initiation factor 5A 4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Eukaryotic translation initiation factor 5A 1.399e-24
Putative Complete
sp_v3.0_unigene209306 SustainPine v3.0 473
AutoFact: Trypan_PARP multi-domain protein 4.0e-17
Sma3: Putative glycine rich protein 5.722e-25
coding
sp_v3.0_unigene209319 SustainPine v3.0 510
AutoFact: 40S ribosomal protein S11 (Fragment) n=1 Tax=Cyanophora paradoxa RepID=O65766_CYAPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S11 4.333e-28
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain