Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: intracellular

Term: GO:0005622  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene4135 SustainPine v3.0 1884
AutoFact: Ran BP2/NZF zinc finger domain-containing protein [Arabidopsis thaliana] sp|Q8GZ43.1|YZR3_ARATH RecName: Full=RanBP2-type zinc finger protein At1g67325 dbj|BAC41896.1| unknown protein [Arabidopsis thaliana] gb|AAO63346.1| At1g67325 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene4155 SustainPine v3.0 2052
AutoFact: nuclear factor Y, subunit C11 [Arabidopsis thaliana] gb|AAL58929.1|AF462841_1 At3g12480/MQC3.32 [Arabidopsis thaliana] dbj|BAB03155.1| unnamed protein product [Arabidopsis thaliana] gb|AAN28786.1| At3g12480/MQC3.32 [Arabidopsis thaliana] gb|AEE75200.1| nu 3.00004e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Repressor protein 4.391e-11
Complete
sp_v3.0_unigene4173 SustainPine v3.0 1740
AutoFact: Abscisic acid receptor PYR1 n=1 Tax=Fragaria x ananassa RepID=F2YHU9_FRAAN 0.0
FL-Next: sp=Abscisic acid receptor PYR1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: AT-rich element binding factor 3 4.786e-16
Complete
sp_v3.0_unigene4204 SustainPine v3.0 2098
AutoFact: Embryonic flower 2 n=1 Tax=Yucca filamentosa RepID=Q1W6L0_YUCFI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Embryonic flower 2 1.009e-24
Complete
sp_v3.0_unigene4489 SustainPine v3.0 603
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Putative polyprotein 1.103e-09
C-terminus
sp_v3.0_unigene4506 SustainPine v3.0 662
AutoFact: CCT domain containing protein 2.0e-19
FL-Next: tr=Zinc finger protein; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Sma3: Constans-like protein 2.493e-21
C-terminus
sp_v3.0_unigene4510 SustainPine v3.0 475
AutoFact: Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ricinus communis RepID=B9RY76_RICCO 2.0e-33
FL-Next: Isoform 3 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
Internal
sp_v3.0_unigene4541 SustainPine v3.0 871
AutoFact: pfam01535, PPR, PPR repeat 4.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide, putative, expressed 8.677e-13
Putative C-terminus
sp_v3.0_unigene4596 SustainPine v3.0 782
AutoFact: GTP-binding protein [Arabidopsis thaliana] gb|AAN12960.1| unknown protein [Arabidopsis thaliana] gb|AEE82230.1| GTP-binding protein [Arabidopsis thaliana] 4.0e-12
FL-Next: tr=Os05g0430400 protein; Oryza sativa subsp. japonica (Rice). 0.0
Putative Complete
sp_v3.0_unigene4628 SustainPine v3.0 567
AutoFact: HECT E3 ubiquitin ligase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZ85_PHYIT 4.0e-31
FL-Next: sp=E3 ubiquitin-protein ligase UPL2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene4650 SustainPine v3.0 125
AutoFact: Pre-rRNA processing protein RRP5 n=3 Tax=Arabidopsis thaliana RepID=Q9LHM6_ARATH 2.0e-08
FL-Next: tr=Pre-rRNA processing protein RRP5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene4674 SustainPine v3.0 321
AutoFact: Putative beta-glucosidase [Oryza sativa Japonica Group] 1.00053e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Beta-glucosidase, putative 1.822e-34
Putative C-terminus
sp_v3.0_unigene4718 SustainPine v3.0 389
AutoFact: ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp|Q9FT73.1|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana] gb|AE 2.0e-39
FL-Next: sp=Mediator of RNA polymerase II transcription subunit 34; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent DNA helicase, RecQ family protein, expressed 5.767e-11
Internal
sp_v3.0_unigene4743 SustainPine v3.0 551
AutoFact: helicase associated domain-containing protein [Arabidopsis thaliana] gb|AEE33493.1| helicase associated domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP-dependent RNA helicase, putative 3.955e-16
Putative N-terminus
sp_v3.0_unigene4854 SustainPine v3.0 261
AutoFact: RNA polymerase II C-terminal domain phosphatase-like 4 [Arabidopsis thaliana] sp|Q00IB6.1|CPL4_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like 4; Short=FCP-like 4; AltName: Full=Carboxyl-terminal phosphatase-like 4; Short=AtCPL4; 5.0e-19
FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene4865 SustainPine v3.0 603
AutoFact: Diphthamide biosynthesis protein 1 n=3 Tax=Arabidopsis RepID=Q9FIT5_ARATH 8.0e-25
FL-Next: tr=Diphthamide biosynthesis protein; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene4877 SustainPine v3.0 378
AutoFact: GDP-mannose 4,6 dehydratase 1 [Arabidopsis thaliana] sp|Q9SNY3.1|GMD1_ARATH RecName: Full=GDP-mannose 4,6 dehydratase 1; AltName: Full=GDP-D-mannose dehydratase 1; Short=GMD 1 gb|AAF07199.1|AF195140_1 GDP-D-mannose 4,6-dehydratase [Arabidopsis thaliana] d 2.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GDP-mannose 4,6 dehydratase 2 6.985e-09
N-terminus
sp_v3.0_unigene4982 SustainPine v3.0 307
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9S7A8_RICCO 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleic acid binding protein, putative 1.486e-20
Internal
sp_v3.0_unigene5019 SustainPine v3.0 1104
AutoFact: dual specificity protein phosphatase family protein [Arabidopsis thaliana] gb|AED93204.1| dual specificity protein phosphatase family protein [Arabidopsis thaliana] 0.0
FL-Next: Isoform 2 of Dual specificity protein phosphatase PHS1 OS=Arabidopsis thaliana GN=PHS1 0.0
Internal
sp_v3.0_unigene5024 SustainPine v3.0 530
AutoFact: Amino acid permease-like protein (Fragment) n=6 Tax=Picea sitchensis RepID=E0Z940_PICSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Amino acid permease 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain