Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Zinc finger, C2H2-like

Term: IPR015880  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene12835 SustainPine v3.0 1061
• AutoFact: zinc finger-related protein [Arabidopsis thaliana] gb|AAG52593.1|AC016447_2 putative zinc finger protein; 21453-22187 [Arabidopsis thaliana] gb|ABK59680.1| At1g68360 [Arabidopsis thaliana] dbj|BAH30364.1| hypothetical protein [Arabidopsis thaliana] gb|AEE 4.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
C-terminus
sp_v3.0_unigene13107 SustainPine v3.0 1791
• AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SG74_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene13281 SustainPine v3.0 976
• AutoFact: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RBR6_RICCO 2.8026e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleic acid binding protein, putative 1.209e-08
C-terminus
sp_v3.0_unigene13361 SustainPine v3.0 1697
• AutoFact: D111/G-patch; Zinc finger, C2H2-type [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr14 scaffold_27, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene13761 SustainPine v3.0 1216
• AutoFact: CAF protein n=17 Tax=Camelineae RepID=Q56Y50_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dicer-like protein 1.025e-12
Complete
sp_v3.0_unigene13857 SustainPine v3.0 948
• AutoFact: Act-Frag_cataly domain containing protein 1.0e-17
• FL-Next: Isoform 2 of Dual specificity protein phosphatase PHS1 OS=Arabidopsis thaliana GN=PHS1 0.0
N-terminus
sp_v3.0_unigene13977 SustainPine v3.0 1397
• AutoFact: C2H2-like zinc finger protein [Arabidopsis thaliana] dbj|BAE98810.1| putative C2H2-type zinc finger protein [Arabidopsis thaliana] gb|AEC05524.1| C2H2-like zinc finger protein [Arabidopsis thaliana] 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleic acid binding protein, putative 7.325e-14
Internal
sp_v3.0_unigene14076 SustainPine v3.0 1403
• AutoFact: Transcriptional factor TINY, putative n=1 Tax=Ricinus communis RepID=B9RR65_RICCO 5.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RAP2-like protein 4.869e-15
Complete
sp_v3.0_unigene14271 SustainPine v3.0 794
• AutoFact: probable ATP-dependent RNA helicase DDX59 [Danio rerio] gb|AAI34851.1| LOC562123 protein [Danio rerio] 5.0e-13
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 41; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 41 1.248e-09
Putative N-terminus
sp_v3.0_unigene14356 SustainPine v3.0 962
• AutoFact: C3HC4-type RING finger protein [Arabidopsis thaliana] gb|AEE79284.1| C3HC4-type RING finger protein [Arabidopsis thaliana] 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Inter-alpha-trypsin inhibitor heavy chain H3, putative 4.863e-08
Internal
sp_v3.0_unigene14968 SustainPine v3.0 2035
• AutoFact: histone acetyltransferase protein HAC108 [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone acetyltransferase 6.133e-28
Putative Complete
sp_v3.0_unigene15866 SustainPine v3.0 683
• AutoFact: ATP-dependent RNA helicase, putative 4.0e-29
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 5.366e-13
Putative N-terminus
sp_v3.0_unigene15948 SustainPine v3.0 2246
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Putative Complete
sp_v3.0_unigene15965 SustainPine v3.0 1028
• AutoFact: Dimer_Tnp_hAT domain containing protein 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene16219 SustainPine v3.0 920
• AutoFact: Ubiquitin specific protease 39 and snrnp assembly factor, putative n=1 Tax=Ricinus communis RepID=B9S3J3_RICCO 0.0
• FL-Next: sp=Putative ubiquitin carboxyl-terminal hydrolase 11; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene16370 SustainPine v3.0 247
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76753.1| pentatric 1.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene16412 SustainPine v3.0 2138
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene16413 SustainPine v3.0 436
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] emb|CAB71884.1| putative zinc-finger protein [Arabidopsis thaliana] gb|AAO29956.1| putative zinc-finger protein [Arabidopsis thaliana] gb|AAQ56798.1| At3g62240 [Arabidopsis thaliana] gb|AEE80326. 2.0e-14
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal
sp_v3.0_unigene16417 SustainPine v3.0 649
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: C2H2 zinc finger protein 4.043e-07
Putative C-terminus
sp_v3.0_unigene16455 SustainPine v3.0 1392
• AutoFact: Nucleic acid binding protein (Fragment) n=1 Tax=Cucumis melo subsp. melo RepID=E5GBX4_CUCME 4.99983e-42
• FL-Next: sp=Lysine-specific demethylase REF6; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain