Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene2653 SustainPine v3.0 1788
• AutoFact: MEI2-like protein 4 [Arabidopsis thaliana] sp|Q9LYN7.1|AML4_ARATH RecName: Full=Protein MEI2-like 4; Short=AML4; AltName: Full=MEI2-like protein 4 emb|CAB87285.1| Mei2-like protein [Arabidopsis thaliana] dbj|BAE99028.1| Mei2-like protein [Arabidopsis thal 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AML1 8.073e-26
C-terminus
sp_v3.0_unigene2663 SustainPine v3.0 1975
• AutoFact: Squamous cell carcinoma antigen recognized by T-cells, putative n=1 Tax=Ricinus communis RepID=B9SPA3_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene2665 SustainPine v3.0 2071
• AutoFact: DEAD-box ATP-dependent RNA helicase 57 [Arabidopsis thaliana] sp|Q84TG1.1|RH57_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 57 gb|AAO64768.1| At3g09720 [Arabidopsis thaliana] dbj|BAE99340.1| RNA helicase like protein [Arabidopsis thaliana] gb|A 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 57 5.167e-09
Complete
sp_v3.0_unigene2695 SustainPine v3.0 564
• AutoFact: zinc finger protein 1 (zfn1) [Arabidopsis thaliana] 4.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene2721 SustainPine v3.0 1764
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene2738 SustainPine v3.0 1220
• AutoFact: zinc finger CCCH domain-containing protein 51 [Arabidopsis thaliana] ref|NP_850780.1| zinc finger CCCH domain-containing protein 51 [Arabidopsis thaliana] sp|Q9FNG6.1|C3H51_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 51; Short=AtC3H51 d 0.0
• FL-Next: sp=Zinc finger CCCH domain-containing protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: RING finger protein 113A, putative 8.985e-09
Putative Complete
sp_v3.0_unigene2757 SustainPine v3.0 2740
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Genomic DNA, chromosome 5, P1 clone:MQJ2 1.077e-09
C-terminus
sp_v3.0_unigene2763 SustainPine v3.0 2135
• AutoFact: DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb|AEE74400.1| DEAD-box ATP-dependent RNA heli 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 5.401e-22
C-terminus
sp_v3.0_unigene2771 SustainPine v3.0 1856
• AutoFact: putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2792 SustainPine v3.0 2249
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.0e-07
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: ALY protein 1.887e-16
Complete
sp_v3.0_unigene2794 SustainPine v3.0 2788
• AutoFact: NHL domain-containing protein [Arabidopsis thaliana] gb|AEE35041.1| NHL domain-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2802 SustainPine v3.0 1791
• AutoFact: ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Arginine/serine-rich splicing factor, putative 1.89e-13
Complete
sp_v3.0_unigene2826 SustainPine v3.0 2704
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 9 0.0
• FL-Next: sp=DEAD-box ATP-dependent RNA helicase 53; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DEAD-box ATP-dependent RNA helicase 7 1.011e-10
Complete
sp_v3.0_unigene2832 SustainPine v3.0 2566
• AutoFact: RNA-binding protein [Arabidopsis thaliana] gb|AAK52994.1|AF375410_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb|AAK56266.1|AF367277_1 At2g43970/F6E13.10 [Arabidopsis thaliana] gb|AAK06847.1| VirF-interacting protein FIP1 [Arabidopsis thaliana] gb|AAL0708 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Lupus la ribonucleoprotein, putative 2.064e-10
Complete
sp_v3.0_unigene2875 SustainPine v3.0 2214
• AutoFact: RHO guanyl-nucleotide exchange factor 14 [Arabidopsis thaliana] dbj|BAD94650.1| hypothetical protein [Arabidopsis thaliana] gb|AEE31380.1| RHO guanyl-nucleotide exchange factor 14 [Arabidopsis thaliana] 0.0
• FL-Next: sp=Rop guanine nucleotide exchange factor 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Rop guanine nucleotide exchange factor, putative 9.655e-23
C-terminus
sp_v3.0_unigene2886 SustainPine v3.0 2091
• AutoFact: zinc finger CCCH domain-containing protein 40 [Arabidopsis thaliana] sp|Q93XW7.1|C3H40_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 40; Short=AtC3H40 gb|AAL24381.1| Unknown protein [Arabidopsis thaliana] gb|AAM91191.1| unknown protein [A 7.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2916 SustainPine v3.0 379
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus coulteri RepID=Q06298_PINCU 3.0e-32
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Reverse transcriptase 7.098e-36
Internal
sp_v3.0_unigene2922 SustainPine v3.0 993
• AutoFact: RNA binding motif protein 19 [Gallus gallus] ref|XP_001233414.1| PREDICTED: RNA binding motif protein 19 [Gallus gallus] 1.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene2949 SustainPine v3.0 2074
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974937.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAK92731.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM20100.1| putative RNA-binding protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 3.03e-11
Complete
sp_v3.0_unigene2973 SustainPine v3.0 1411
• AutoFact: Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9S1W6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: FERONIA receptor-like kinase 7.698e-17
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain