Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene5794 SustainPine v3.0 1845
AutoFact: putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group] gb|EAZ14353.1| hypothetical p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: RNA-binding region-containing protein, putative 4.112e-15
Putative Complete
sp_v3.0_unigene5879 SustainPine v3.0 1905
AutoFact: Heterogeneous nuclear ribonucleoprotein 27C, putative n=1 Tax=Ricinus communis RepID=B9SSS5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heterogeneous nuclear ribonucleoprotein 27C, putative 5.805e-16
Complete
sp_v3.0_unigene5897 SustainPine v3.0 3762
AutoFact: RNA-binding protein MEI2, putative; 36123-32976 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AML1 7.558e-26
Complete
sp_v3.0_unigene6039 SustainPine v3.0 1838
AutoFact: DNA-damage repair protein drt111, putative n=1 Tax=Ricinus communis RepID=B9SB37_RICCO 0.0
FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Splicing factor 45 4.622e-09
Complete
sp_v3.0_unigene6045 SustainPine v3.0 1706
AutoFact: putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor, arginine/serine-rich 2 7.149e-16
Complete
sp_v3.0_unigene6059 SustainPine v3.0 2170
AutoFact: Heterogeneous nuclear ribonucleoprotein A1/A3 n=2 Tax=Arabidopsis RepID=Q9FM47_ARATH 7.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein At3g13224 1.284e-08
Putative Complete
sp_v3.0_unigene6086 SustainPine v3.0 913
AutoFact: RNA-directed RNA polymerase-like, putative n=3 Tax=Solanum demissum RepID=Q6L447_SOLDE 3.0e-26
FL-Next: sp=Probable RNA-dependent RNA polymerase 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: RNA-directed RNA polymerase 9.005e-08
C-terminus
sp_v3.0_unigene6169 SustainPine v3.0 2912
AutoFact: Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IKW9_POPTR 0.0
FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA-directed RNA polymerase 1.459e-23
C-terminus
sp_v3.0_unigene6175 SustainPine v3.0 2409
AutoFact: putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene6189 SustainPine v3.0 1636
AutoFact: PREDICTED: similar to TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor isoform 6 [Canis familiaris] 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6277 SustainPine v3.0 3466
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6387 SustainPine v3.0 2774
AutoFact: PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein-1) (APP-1) isoform 17 [Canis familiaris] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly(A)-binding protein 1.314e-22
Complete
sp_v3.0_unigene6511 SustainPine v3.0 2620
AutoFact: Phosphofructokinase, putative n=1 Tax=Ricinus communis RepID=B9RRX6_RICCO 0.0
FL-Next: sp=6-phosphofructokinase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Phosphofructokinase, putative 3.151e-19
Complete
sp_v3.0_unigene6590 SustainPine v3.0 3019
AutoFact: putative receptor protein kinase [Arabidopsis thaliana] gb|ACN59306.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb|AEC09344.1| putative receptor protein kinase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Leucine-rich repeat receptor-like protein kinase 8.681e-19
Complete
sp_v3.0_unigene6630 SustainPine v3.0 1344
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7C9_RICCO 1.0e-34
FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Putative C-terminus
sp_v3.0_unigene6700 SustainPine v3.0 2072
AutoFact: putative arginine/serine-rich protein [Arabidopsis thaliana] 9.99967e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene6714 SustainPine v3.0 1947
AutoFact: RHO guanyl-nucleotide exchange factor 7 [Arabidopsis thaliana] emb|CAB82974.1| putative protein [Arabidopsis thaliana] gb|AAU94394.1| At5g02010 [Arabidopsis thaliana] gb|AAV59279.1| At5g02010 [Arabidopsis thaliana] gb|AED90419.1| RHO guanyl-nucleotide exc 0.0
FL-Next: sp=Rop guanine nucleotide exchange factor 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Pollen-specific kinase partner protein 5.782e-23
C-terminus
sp_v3.0_unigene6721 SustainPine v3.0 1083
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7C9_RICCO 1.0e-19
FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
C-terminus
sp_v3.0_unigene6762 SustainPine v3.0 2672
AutoFact: pre-mRNA-splicing factor 38B [Arabidopsis thaliana] gb|AAM13215.1| unknown protein [Arabidopsis thaliana] gb|AAP68295.1| At5g37370 [Arabidopsis thaliana] gb|AED94173.1| pre-mRNA-splicing factor 38B [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6779 SustainPine v3.0 1193
AutoFact: Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gb|AAC09322.1| dimethyladenosine transferase [Arabidopsis thaliana] dbj|BAC42078.1| putative dimethyladenosine transferase [Arabidopsis thaliana] gb|AAO50630.1| putative dimethyladeno 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dimethyladenosine transferase 9.276e-09
Complete

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain