Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene873 SustainPine v3.0 1436
AutoFact: putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor, arginine/serine-rich 2 7.149e-16
Complete
sp_v3.0_unigene925 SustainPine v3.0 2574
AutoFact: Ninja-family protein AFP3 [Arabidopsis thaliana] ref|NP_001030794.1| Ninja-family protein AFP3 [Arabidopsis thaliana] ref|NP_001078222.1| Ninja-family protein AFP3 [Arabidopsis thaliana] sp|Q94F39.1|AFP3_ARATH RecName: Full=Ninja-family protein AFP3; AltN 5.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene944 SustainPine v3.0 1278
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ZCW7 protein 7.797e-06
Putative Complete
sp_v3.0_unigene1036 SustainPine v3.0 1886
AutoFact: Putative RRM-containing protein SEB-4 n=3 Tax=Poaceae RepID=Q5N8W4_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1106 SustainPine v3.0 1183
AutoFact: Stachyose synthase, putative n=1 Tax=Ricinus communis RepID=B9SXA4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Alkaline alpha galactosidase 1.988e-12
C-terminus
sp_v3.0_unigene1235 SustainPine v3.0 3833
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1236 SustainPine v3.0 1237
AutoFact: Splicing factor 1/branch point binding protein (RRM superfamily) (ISS) [Ostreococcus tauri] emb|CAL55634.1| Splicing factor 1/branch point binding protein (RRM superfamily) (ISS) [Ostreococcus tauri] 0.0001
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene1268 SustainPine v3.0 3852
AutoFact: RNA recognition motif (ISS) [Ostreococcus tauri] emb|CAL51584.1| RNA recognition motif (ISS) [Ostreococcus tauri] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1292 SustainPine v3.0 3810
AutoFact: protein chromatin remodeling 24 [Arabidopsis thaliana] gb|AAL58917.1|AF462829_1 AT5g63950/MBM17_5 [Arabidopsis thaliana] gb|AAM98274.1| At5g63950/MBM17_5 [Arabidopsis thaliana] gb|AED97819.1| protein chromatin remodeling 24 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 family DNA-dependent ATPase 9.271e-07
Complete
sp_v3.0_unigene1326 SustainPine v3.0 3646
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 0.0
FL-Next: sp=KH domain-containing protein At1g09660; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene1422 SustainPine v3.0 2739
AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1443 SustainPine v3.0 3458
AutoFact: Cell division protein ftsH, putative n=1 Tax=Ricinus communis RepID=B9SHY4_RICCO 0.0
FL-Next: sp=ATP-dependent zinc metalloprotease FTSH 7, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Cell division protein ftsH, putative 1.876e-14
Complete
sp_v3.0_unigene1501 SustainPine v3.0 904
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 2.0e-31
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Cold-shock protein with RNA binding domain 4.18e-08
Putative Complete
sp_v3.0_unigene1507 SustainPine v3.0 1368
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAK62429.1|AF386984_1 poly(A)-binding protein II-like [Arabidopsis thaliana] dbj|BAB11662.1| poly(A)-binding protein II-like [Arabidopsis thaliana] gb|AAN15337.1| poly(A)-binding protein I 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1508 SustainPine v3.0 2264
AutoFact: RNA-binding protein, putative [Musa acuminata] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1513 SustainPine v3.0 2089
AutoFact: RNA-binding protein-like [Oryza sativa Japonica Group] gb|EEE69405.1| hypothetical protein OsJ_28765 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene1523 SustainPine v3.0 1639
AutoFact: RNA-binding protein 45A [Arabidopsis thaliana] gb|AAG40335.1|AF324983_1 AT5g54900 [Arabidopsis thaliana] gb|ABL66801.1| At5g54900 [Arabidopsis thaliana] gb|AED96554.1| RNA-binding protein 45A [Arabidopsis thaliana] 0.0
FL-Next: sp=Polyadenylate-binding protein RBP45A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Nuclear acid binding protein, putative 9.787e-23
Complete
sp_v3.0_unigene1533 SustainPine v3.0 579
AutoFact: GRP multi-domain protein 3.0e-07
coding
sp_v3.0_unigene1596 SustainPine v3.0 1273
AutoFact: Unassigned protein 1.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene1707 SustainPine v3.0 1286
AutoFact: Sex determining protein n=3 Tax=Mus musculus musculus RepID=O35861_MOUSE 4.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transposon protein, putative, CACTA, En/Spm sub-class, expressed 3.394e-17
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain