Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene8287 SustainPine v3.0 810
• AutoFact: katanin p80 subunit-like protein [Arabidopsis thaliana] gb|AED91294.1| katanin p80 subunit-like protein [Arabidopsis thaliana] 3.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene8302 SustainPine v3.0 3712
• AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5V8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleotide binding protein, putative 1.794e-06
Complete
sp_v3.0_unigene8342 SustainPine v3.0 1604
• AutoFact: embryo sac development arrest 7 protein [Arabidopsis thaliana] emb|CAB72169.1| putative protein [Arabidopsis thaliana] gb|AAL47467.1| AT3g56990/F24I3_70 [Arabidopsis thaliana] gb|AEE79596.1| embryo sac development arrest 7 protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene8396 SustainPine v3.0 1130
• AutoFact: [R] COG2319 FOG: WD40 repeat 2.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene8440 SustainPine v3.0 931
• AutoFact: pfam12490, BCAS3, Breast carcinoma amplified sequence 3 9.0e-35
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: Breast carcinoma amplified sequence, putative 5.359e-13
Internal
sp_v3.0_unigene8442 SustainPine v3.0 2666
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK50098.1|AF372960_1 AT3g15470/MJK13_13 [Arabidopsis thaliana] gb|AAF35413.1| unknown protein [Arabidopsis thaliana] dbj|BAB02376.1| WD-40 repeat protein-like [Arabidopsis thaliana] gb|A 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WD-repeat protein, putative 3.187e-14
C-terminus
sp_v3.0_unigene8470 SustainPine v3.0 2541
• AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9SRX4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene8680 SustainPine v3.0 1162
• AutoFact: DUF3776 domain containing protein 0.0001
• FL-Next: Isoform 2 of Enhancer of mRNA-decapping protein 4 OS=Arabidopsis thaliana GN=VCS 0.0
Internal
sp_v3.0_unigene8740 SustainPine v3.0 1949
• AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SMG7_RICCO 0.0
• FL-Next: tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean). 0.0
C-terminus
sp_v3.0_unigene8788 SustainPine v3.0 434
• AutoFact: WD-40 repeat protein [Solanum lycopersicum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene8850 SustainPine v3.0 3822
• AutoFact: coatomer subunit alpha-2 [Arabidopsis thaliana] sp|Q9SJT9.1|COPA2_ARATH RecName: Full=Coatomer subunit alpha-2; AltName: Full=Alpha-coat protein 2; Short=Alpha-COP 2 gb|AAD23699.1| coatomer alpha subunit [Arabidopsis thaliana] dbj|BAF00596.1| coatomer alp 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Coatomer subunit alpha-2 3.002e-08
C-terminus
sp_v3.0_unigene8852 SustainPine v3.0 1355
• AutoFact: WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana] emb|CAB96849.1| putative protein [Arabidopsis thaliana] gb|AED91612.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene8905 SustainPine v3.0 1670
• AutoFact: WD-repeat protein GhTTG2 [Gossypium hirsutum] gb|AAM95644.1| WD-repeat protein GhTTG2 [Gossypium hirsutum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: WD-repeat protein GhTTG2 0.0
Complete
sp_v3.0_unigene8999 SustainPine v3.0 694
• AutoFact: COP1 homolog [Solanum lycopersicum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: COP1 9.329e-11
Putative C-terminus
sp_v3.0_unigene9087 SustainPine v3.0 1296
• AutoFact: cell cycle arrest protein BUB3 [Arabidopsis thaliana] dbj|BAB02543.1| mitotic checkpoint protein [Arabidopsis thaliana] gb|AAM64953.1| mitotic checkpoint protein, putative [Arabidopsis thaliana] gb|AAO42274.1| putative mitotic checkpoint protein [Arabidop 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene9212 SustainPine v3.0 258
• AutoFact: Phosphoinositide-3-kinase, regulatory subunit 4, p150 n=2 Tax=Arabidopsis RepID=Q9M0E5_ARATH 4.0e-11
• FL-Next: tr=ATP binding protein, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene9267 SustainPine v3.0 3577
• AutoFact: Periodic tryptophan protein-associated region; WD40-like [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene9308 SustainPine v3.0 2000
• AutoFact: WD-repeat protein [Arabidopsis arenosa] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene9520 SustainPine v3.0 1832
• AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AEC09360.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein At2g37160 4.622e-09
C-terminus
sp_v3.0_unigene9649 SustainPine v3.0 590
• AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAB41313.1| putative protein [Arabidopsis thaliana] gb|AAP37694.1| At3g51930 [Arabidopsis thaliana] dbj|BAF00246.1| hypothetical protein [Arabidopsis thaliana] gb|AEE78864.1| transducin/ 2.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: F-box and wd40 domain protein, putative 5.014e-07
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain