Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: WD40/YVTN repeat-like-containing domain

Term: IPR015943  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene750 SustainPine v3.0 1480
AutoFact: elongator complex protein 1 [Arabidopsis thaliana] dbj|BAB08695.1| unnamed protein product [Arabidopsis thaliana] gb|AED91927.1| elongator complex protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene754 SustainPine v3.0 1925
AutoFact: Fertilization-independent endosperm (Fragment) n=2 Tax=Hieracium RepID=B1ABR5_HIEPL 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Fertilization-independent endosperm protein 2.907e-19
Complete
sp_v3.0_unigene812 SustainPine v3.0 1604
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAN13056.1| unknown protein [Arabidopsis thaliana] gb|AEE84462.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=WD-repeat protein, putative; Ricinus communis (Castor bean). 0.0
Complete
sp_v3.0_unigene813 SustainPine v3.0 1775
AutoFact: F-box/WD-40 repeat-containing protein [Arabidopsis thaliana] sp|Q9SV01.2|FBW4_ARATH RecName: Full=F-box/WD-40 repeat-containing protein At3g52030 gb|AEE78876.1| F-box/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1055 SustainPine v3.0 2313
AutoFact: zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] dbj|BAB11046.1| unnamed protein product [Arabidopsis thaliana] gb|AED96154.1| zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_139, whole genome shotgun sequence 1.346e-12
Complete
sp_v3.0_unigene1089 SustainPine v3.0 1685
AutoFact: WD repeat-containing protein 61 [Arabidopsis thaliana] emb|CAB43658.1| putative protein [Arabidopsis thaliana] emb|CAB79741.1| putative protein [Arabidopsis thaliana] gb|AAP37692.1| At4g29830 [Arabidopsis thaliana] gb|AEE85683.1| WD repeat-containing prot 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1144 SustainPine v3.0 2191
AutoFact: pfam02214, K_tetra, K+ channel tetramerisation domain 4.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1161 SustainPine v3.0 2665
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AEE82568.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene1190 SustainPine v3.0 1451
AutoFact: Glutaminyl-peptide cyclotransferase n=4 Tax=Arabidopsis RepID=QPCT_ARATH 0.0
FL-Next: sp=Glutaminyl-peptide cyclotransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Putative glutamine cyclotransferase 1.214e-09
Complete
sp_v3.0_unigene1258 SustainPine v3.0 3690
AutoFact: Cellulose synthase n=13 Tax=core eudicotyledons RepID=B9IKV7_POPTR 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Sma3: Cellulose synthase 0.0
Complete
sp_v3.0_unigene1330 SustainPine v3.0 3282
AutoFact: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Arabidopsis thaliana] sp|O22212.1|PRP4_ARATH RecName: Full=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; AltName: Full=Protein EMBRYO DEFECTIVE 2776 gb|AAB84332.1| putative small nuclear 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1364 SustainPine v3.0 3881
AutoFact: U3 small nucleolar RNA-associated protein, putative n=1 Tax=Ricinus communis RepID=B9S245_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene1393 SustainPine v3.0 4666
AutoFact: Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SGV7_RICCO 0.0
FL-Next: sp=Enhancer of mRNA-decapping protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene1401 SustainPine v3.0 2475
AutoFact: elongator protein 2 [Arabidopsis thaliana] gb|AEE32440.1| elongator protein 2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene1449 SustainPine v3.0 1927
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RWJ4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: WD-repeat protein, putative 2.346e-14
Putative Complete
sp_v3.0_unigene1538 SustainPine v3.0 1533
AutoFact: PREDICTED: similar to protein kinase family protein / WD-40 repeat family protein n=1 Tax=Vitis vinifera RepID=UPI0001984267 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene1567 SustainPine v3.0 3892
AutoFact: PREDICTED: HIV-1 Vpr binding protein, partial [Bos taurus] 0.0
FL-Next: sp=DDB1- and CUL4-associated factor homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene1739 SustainPine v3.0 1680
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAM13156.1| unknown protein [Arabidopsis thaliana] gb|AAN15609.1| unknown protein [Arabidopsis thaliana] gb|AEE29984.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=WD repeat-containing protein DWA2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Transducin / WD-40 repeat protein-like 3.048e-08
Complete
sp_v3.0_unigene1741 SustainPine v3.0 2868
AutoFact: cyclophilin 59 [Arabidopsis thaliana] gb|AAS75309.1| multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gb|AEE32989.1| cyclophilin 59 [Arabidopsis thaliana] 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1743 SustainPine v3.0 3585
AutoFact: coatomer complex subunit [Brachypodium sylvaticum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Coatomer beta subunit, putative 2.155e-11
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain