Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome assembly

Term: GO:0006334  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene36636 SustainPine v3.0 845
AutoFact: Histone H2A n=1 Tax=Populus trichocarpa RepID=B9I7E7_POPTR 7.0e-36
FL-Next: sp=Histone H2A; Pinus taeda (Loblolly pine). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene36647 SustainPine v3.0 1175
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene36673 SustainPine v3.0 750
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene36693 SustainPine v3.0 1205
AutoFact: putative histone H1 [Cryptomeria japonica] 6.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 1.688e-08
Putative Complete
sp_v3.0_unigene36705 SustainPine v3.0 773
AutoFact: Histone H3 n=2 Tax=Pediculus humanus corporis RepID=E0V960_PEDHC 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene36760 SustainPine v3.0 718
AutoFact: Histone H3 n=2 Tax=Pediculus humanus corporis RepID=E0V960_PEDHC 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene36762 SustainPine v3.0 668
AutoFact: Histone H2A n=3 Tax=Piroplasmida RepID=A7AUI5_BABBO 2.0e-14
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 9.82001e-40
C-terminus
sp_v3.0_unigene37939 SustainPine v3.0 629
AutoFact: Histone H3 n=1 Tax=Ostreococcus tauri RepID=Q00YS0_OSTTA 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Putative Complete
sp_v3.0_unigene37978 SustainPine v3.0 453
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Putative Complete
sp_v3.0_unigene38685 SustainPine v3.0 1211
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 3.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene39094 SustainPine v3.0 899
AutoFact: histone H4 [Hyacinthus orientalis] 2.0e-38
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 1.229e-11
Complete
sp_v3.0_unigene39544 SustainPine v3.0 146
AutoFact: Histone H2A n=1 Tax=Malassezia globosa CBS 7966 RepID=A8Q409_MALGO 0.0001
FL-Next: sp=Histone H2A; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2A 0.0
Internal
sp_v3.0_unigene40393 SustainPine v3.0 267
AutoFact: Histone H3 n=3 Tax=Eukaryota RepID=B6SJQ5_MAIZE 6.0e-06
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
C-terminus
sp_v3.0_unigene40397 SustainPine v3.0 521
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Monodelphis domestica RepID=UPI00020F6110 4.0e-22
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene40653 SustainPine v3.0 414
AutoFact: leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Extensin-like protein 7.47e-29
Putative N-terminus
sp_v3.0_unigene42109 SustainPine v3.0 572
AutoFact: histone h4 [Oryza sativa Indica Group] 1.0e-14
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 2.731e-09
C-terminus
sp_v3.0_unigene42263 SustainPine v3.0 915
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 4.99997e-41
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene42264 SustainPine v3.0 973
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 8.00001e-42
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene42265 SustainPine v3.0 1088
AutoFact: Histone H2A n=15 Tax=Embryophyta RepID=A5AKG7_VITVI 9.99967e-42
FL-Next: sp=Histone H2A; Vitis vinifera (Grape). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene42279 SustainPine v3.0 802
AutoFact: Histone H3 n=1 Tax=Oryza sativa Indica Group RepID=A2Y8W0_ORYSI 5.0e-27
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain