Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome assembly

Term: GO:0006334  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene154632 SustainPine v3.0 506
AutoFact: Histone H2A n=1 Tax=Chlorella variabilis RepID=E1Z345_9CHLO 2.94273e-44
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene155076 SustainPine v3.0 111
AutoFact: Histone H2A n=1 Tax=Ricinus communis RepID=B9RF98_RICCO 7.0e-07
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 4.079e-24
Internal
sp_v3.0_unigene155173 SustainPine v3.0 276
AutoFact: Histone H2A n=1 Tax=Paramecium tetraurelia RepID=A0CYL9_PARTE 4.0e-12
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene155623 SustainPine v3.0 414
AutoFact: Histone H4, major n=31 Tax=Oligohymenophorea RepID=H41_TETPY 2.0e-37
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 1.127e-11
Putative Complete
sp_v3.0_unigene155778 SustainPine v3.0 356
AutoFact: PREDICTED: histone H2A.Z-like [Monodelphis domestica] 9.99995e-41
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene155885 SustainPine v3.0 290
AutoFact: Histone H2A n=1 Tax=Trichinella spiralis RepID=E5RYR8_TRISP 2.0e-30
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene156086 SustainPine v3.0 363
AutoFact: Histone H3 n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1ML80_MICPC 3.0e-20
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Putative C-terminus
sp_v3.0_unigene156733 SustainPine v3.0 352
AutoFact: Histone H2B n=1 Tax=Moneuplotes crassus RepID=H2B_EUPCR 2.0e-26
FL-Next: sp=Histone H2B; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.47242e-42
Internal
sp_v3.0_unigene156745 SustainPine v3.0 313
AutoFact: histone H4 [Hyacinthus orientalis] 3.0e-30
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 3.194e-09
Putative Complete
sp_v3.0_unigene157226 SustainPine v3.0 331
AutoFact: Histone H2B n=1 Tax=Branchiostoma floridae RepID=C3YWC7_BRAFL 3.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 9.652e-30
Putative C-terminus
sp_v3.0_unigene157240 SustainPine v3.0 279
AutoFact: histone H2A [Coprinopsis cinerea okayama7#130] gb|EAU89414.1| histone H2A [Coprinopsis cinerea okayama7#130] 6.0e-33
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative N-terminus
sp_v3.0_unigene157246 SustainPine v3.0 413
AutoFact: Histone H2A n=1 Tax=Schizophyllum commune H4-8 RepID=D8QD52_SCHCM 1.0e-34
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene157423 SustainPine v3.0 339
AutoFact: Histone H2B.1 n=3 Tax=Tetrahymena RepID=H2B1_TETTH 8.0e-32
FL-Next: sp=Histone H2B; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.877e-36
Putative C-terminus
sp_v3.0_unigene157457 SustainPine v3.0 228
AutoFact: Histone H2B n=2 Tax=Sclerotiniaceae RepID=A6SDQ0_BOTFB 4.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 2.034e-27
C-terminus
sp_v3.0_unigene157503 SustainPine v3.0 442
AutoFact: Histone H3 n=30 Tax=Eukaryota RepID=H3_ASPFU 1.0e-26
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene157585 SustainPine v3.0 514
AutoFact: Histone H2A n=3 Tax=Monosiga brevicollis RepID=A9USP1_MONBE 9.80909e-45
FL-Next: sp=Histone H2A; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene157647 SustainPine v3.0 471
AutoFact: Histone H2B n=1 Tax=Culex quinquefasciatus RepID=B0X774_CULQU 3.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 2.184e-34
Complete
sp_v3.0_unigene157812 SustainPine v3.0 355
AutoFact: Histone H2A (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3ZYM2_BRAFL 1.0e-37
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene157847 SustainPine v3.0 403
AutoFact: PREDICTED: histone H4 replacement-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CB9ED1 2.0e-36
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 0.0
Putative Complete
sp_v3.0_unigene157870 SustainPine v3.0 366
AutoFact: PREDICTED: histone H2A-like n=2 Tax=Anolis carolinensis RepID=UPI0002038DF2 2.0e-39
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain