Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome assembly

Term: GO:0006334  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene131589 SustainPine v3.0 623
AutoFact: Histone H1 linker n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RX26_PHYPA 2.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
N-terminus
sp_v3.0_unigene133323 SustainPine v3.0 438
AutoFact: Histone H2B.3 n=41 Tax=Spermatophyta RepID=H2B3_ARATH 8.0e-36
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2B 6.74e-29
C-terminus
sp_v3.0_unigene133332 SustainPine v3.0 199
Sma3: Histone H2B 5.44e-26
unknown
sp_v3.0_unigene133639 SustainPine v3.0 491
AutoFact: Histone H2B n=1 Tax=Ostreococcus tauri RepID=Q013K3_OSTTA 4.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.68e-32
C-terminus
sp_v3.0_unigene135749 SustainPine v3.0 470
AutoFact: Histone H3 n=1 Tax=Oikopleura dioica RepID=E4WRZ1_OIKDI 6.0e-22
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene135933 SustainPine v3.0 249
Sma3: Nucleosome/chromatin assembly factor A 6.823e-06
unknown
sp_v3.0_unigene138095 SustainPine v3.0 246
AutoFact: histone H4 [Hyacinthus orientalis] 8.0e-38
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 1.194e-11
Putative Complete
sp_v3.0_unigene138391 SustainPine v3.0 400
AutoFact: telomere repeat binding factor 1 [Arabidopsis thaliana] 6.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Single myb histone 1.82e-18
N-terminus
sp_v3.0_unigene140571 SustainPine v3.0 222
AutoFact: TT_ORF1 domain containing protein 2.0e-05
Sma3: Histone H2B 4.2039e-45
coding
sp_v3.0_unigene140966 SustainPine v3.0 611
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 5.444e-21
N-terminus
sp_v3.0_unigene141318 SustainPine v3.0 736
AutoFact: Histone H1 linker n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTA3_PHYPA 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Putative C-terminus
sp_v3.0_unigene141899 SustainPine v3.0 335
AutoFact: histone H4 [Hyacinthus orientalis] 5.0e-30
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 1.194e-11
Putative Complete
sp_v3.0_unigene142256 SustainPine v3.0 808
AutoFact: Histone H3 n=1 Tax=Culex quinquefasciatus RepID=B0WZ74_CULQU 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene142257 SustainPine v3.0 1178
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene142279 SustainPine v3.0 837
AutoFact: Histone H2B.2 n=33 Tax=Spermatophyta RepID=H2B2_SOLLC 1.99965e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 5.757e-31
Complete
sp_v3.0_unigene142307 SustainPine v3.0 925
AutoFact: nucleosome assembly protein 1-like protein 4 [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nucleosome/chromatin assembly factor group A 9.835e-09
Complete
sp_v3.0_unigene142362 SustainPine v3.0 569
AutoFact: Histone H2A n=1 Tax=Picea sitchensis RepID=A9P2K6_PICSI 3.0e-13
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene143101 SustainPine v3.0 443
AutoFact: histone H4 [Hyacinthus orientalis] 7.0e-17
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 2.903e-09
Putative Complete
sp_v3.0_unigene143102 SustainPine v3.0 227
AutoFact: Unassigned protein 3.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene143135 SustainPine v3.0 756
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain