Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1991 SustainPine v3.0 2194
AutoFact: transcription factor DcMYB2 [Daucus carota] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: MYB transcription factor 3.78351e-44
Complete
sp_v3.0_unigene2007 SustainPine v3.0 3104
AutoFact: kinesin 3 [Arabidopsis thaliana] sp|P46875.1|ATK3_ARATH RecName: Full=Kinesin-3; AltName: Full=Kinesin-like protein C dbj|BAA04674.1| heavy chain polypeptide of kinesin-like protein [Arabidopsis thaliana] gb|AAO24588.1| At5g54670 [Arabidopsis thaliana] db 0.0
FL-Next: sp=Kinesin-3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Kinesin heavy chain, putative 2.504e-15
Complete
sp_v3.0_unigene2043 SustainPine v3.0 384
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat protein 1.4013e-45
C-terminus
sp_v3.0_unigene2054 SustainPine v3.0 449
AutoFact: DUF659 domain containing protein 6.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene2069 SustainPine v3.0 4239
AutoFact: type-B response regulator [Catharanthus roseus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Type-b response regulator 3.809e-32
Complete
sp_v3.0_unigene2081 SustainPine v3.0 2345
AutoFact: TATA binding protein associated factor n=1 Tax=Solanum tuberosum RepID=Q3LHL0_SOLTU 7.0e-37
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene2092 SustainPine v3.0 2211
AutoFact: protein ELC [Arabidopsis thaliana] sp|Q9LHG8.1|ELC_ARATH RecName: Full=Protein ELC; Short=AtELC; AltName: Full=ESCRT-I complex subunit VPS23 homolog 1; AltName: Full=Vacuolar protein-sorting-associated protein 23 homolog 1 gb|AAG51025.1|AC069474_24 unknow 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2097 SustainPine v3.0 1220
AutoFact: aspartyl protease-like protein [Arabidopsis thaliana] gb|AAM15292.1| putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana] gb|AAD21712.2| putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana] gb|AEC10194.1| aspartyl p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Aspartic proteinase nepenthesin-1, putative 3.105e-06
Putative C-terminus
sp_v3.0_unigene2133 SustainPine v3.0 1744
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9STJ6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AT-hook DNA-binding protein 8.451e-18
Complete
sp_v3.0_unigene2150 SustainPine v3.0 493
AutoFact: Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana] sp|Q9LG26.2|PARN_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN; AltName: Full=Polyadenylate-specific ribonuclease; Short=AtPARN; AltName: Full=Protein ABA hypersensitive germination 2 dbj| 1.0e-31
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene2198 SustainPine v3.0 660
AutoFact: Putative Myb DNA binding protein n=1 Tax=Eutrema halophilum RepID=C7SI19_THEHA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative regulatory protein 1.488e-08
Internal
sp_v3.0_unigene2201 SustainPine v3.0 1432
AutoFact: R2R3-MYB transcription factor MYB4 n=1 Tax=Picea glauca RepID=A5JYE8_PICGL 0.0
FL-Next: tr=R2R3-MYB transcription factor MYB4; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: MYB transcription factor 2.806e-34
Complete
sp_v3.0_unigene2240 SustainPine v3.0 1792
AutoFact: protein phosphatase 2C [Mesembryanthemum crystallinum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Protein phosphatase 2c, putative 7.019e-14
Complete
sp_v3.0_unigene2244 SustainPine v3.0 1708
AutoFact: DUF296 domain containing protein 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein-like 4.289e-29
Complete
sp_v3.0_unigene2286 SustainPine v3.0 1232
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9T0T3_RICCO 4.0e-32
FL-Next: sp=Dof zinc finger protein DOF2.3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Dof zinc finger protein 3.167e-11
Complete
sp_v3.0_unigene2336 SustainPine v3.0 587
AutoFact: FAP multi-domain protein 2.0e-15
Sma3: Anther-specific proline rich protein 1.837e-06
coding
sp_v3.0_unigene2385 SustainPine v3.0 2196
AutoFact: transcription factor bHLH30 [Arabidopsis thaliana] sp|Q9S7Y1.1|BH030_ARATH RecName: Full=Transcription factor bHLH30; AltName: Full=Basic helix-loop-helix protein 30; Short=AtbHLH30; Short=bHLH 30; AltName: Full=Transcription factor EN 53; AltName: Full=b 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA binding protein, putative 3.593e-06
Putative C-terminus
sp_v3.0_unigene2400 SustainPine v3.0 873
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSC2_RICCO 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative anthocyanin transcriptional regulator 7.314e-11
Putative Complete
sp_v3.0_unigene2407 SustainPine v3.0 4265
AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2449 SustainPine v3.0 2853
AutoFact: Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9SYY2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Microtubule-associated protein MAP65-1a 5.822e-27
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain