Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene1501 SustainPine v3.0 904
• AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 2.0e-31
• FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Cold-shock protein with RNA binding domain 4.18e-08
Putative Complete
sp_v3.0_unigene1518 SustainPine v3.0 1621
• AutoFact: myosin XI [Nicotiana tabacum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Myosin XI 4.089e-27
Complete
sp_v3.0_unigene1523 SustainPine v3.0 1639
• AutoFact: RNA-binding protein 45A [Arabidopsis thaliana] gb|AAG40335.1|AF324983_1 AT5g54900 [Arabidopsis thaliana] gb|ABL66801.1| At5g54900 [Arabidopsis thaliana] gb|AED96554.1| RNA-binding protein 45A [Arabidopsis thaliana] 0.0
• FL-Next: sp=Polyadenylate-binding protein RBP45A; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Nuclear acid binding protein, putative 9.787e-23
Complete
sp_v3.0_unigene1535 SustainPine v3.0 4578
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SV38_VITVI 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Keteleeria davidiana (David's keteleeria) (Pseudotsuga davidiana). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase 0.0
Complete
sp_v3.0_unigene1544 SustainPine v3.0 3990
• AutoFact: DNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=D7U4B5_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1554 SustainPine v3.0 1048
• AutoFact: Myosin XI, putative n=1 Tax=Ricinus communis RepID=B9RQX7_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
• Sma3: Myosin XI, putative 8.464e-23
Internal
sp_v3.0_unigene1558 SustainPine v3.0 638
• AutoFact: Myc-like anthocyanin regulatory protein n=2 Tax=Cornus RepID=Q675M4_CORAT 1.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative anthocyanin transcriptional regulator 3.793e-24
C-terminus
sp_v3.0_unigene1568 SustainPine v3.0 3619
• AutoFact: Putative auxin response factor 6/8 n=1 Tax=Ginkgo biloba RepID=E1UHX7_GINBI 0.0
• FL-Next: Isoform 2 of Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 0.0
• Sma3: Auxin response factor, putative 8.08829e-42
Complete
sp_v3.0_unigene1594 SustainPine v3.0 1585
• AutoFact: Zinc transporter, putative n=1 Tax=Asparagus officinalis RepID=Q2XNV5_ASPOF 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative zinc transporter 8.968e-17
Complete
sp_v3.0_unigene1616 SustainPine v3.0 1556
• AutoFact: putative elongation factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription elongation factor s-II, putative 2.822e-11
Complete
sp_v3.0_unigene1628 SustainPine v3.0 3275
• AutoFact: protein GT-2-like 1 [Arabidopsis thaliana] gb|AEE31573.1| protein GT-2-like 1 [Arabidopsis thaliana] 0.0
• FL-Next: sp=Trihelix transcription factor GTL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: GT-2 factor 3.703e-12
Complete
sp_v3.0_unigene1629 SustainPine v3.0 3502
• AutoFact: methyl-CPG-binding domain 8 [Arabidopsis thaliana] gb|AAL86338.1| unknown protein [Arabidopsis thaliana] gb|AAM91660.1| unknown protein [Arabidopsis thaliana] gb|AEE30228.1| methyl-CPG-binding domain 8 [Arabidopsis thaliana] 1.0e-21
• FL-Next: Isoform 2 of Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana GN=MBD8 0.0
Complete
sp_v3.0_unigene1649 SustainPine v3.0 1784
• AutoFact: transcription factor GTE6 [Arabidopsis thaliana] sp|Q9FT54.1|GTE6_ARATH RecName: Full=Transcription factor GTE6; AltName: Full=Bromodomain-containing protein GTE6; AltName: Full=Protein GENERAL TRANSCRIPTION FACTOR GROUP E6; AltName: Full=Protein GLOBAL T 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Global transcription factor group 1.433e-10
Putative Complete
sp_v3.0_unigene1671 SustainPine v3.0 1170
• AutoFact: Glycosyl hydrolase family 38 protein [Arabidopsis thaliana] ref|NP_851037.2| Glycosyl hydrolase family 38 protein [Arabidopsis thaliana] gb|AAM20555.1| alpha-mannosidase [Arabidopsis thaliana] gb|AAN15620.1| alpha-mannosidase [Arabidopsis thaliana] gb|AED 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Sma3: Lysosomal alpha-mannosidase, putative 8.24e-16
C-terminus
sp_v3.0_unigene1680 SustainPine v3.0 2155
• AutoFact: transcription factor TCP4 [Arabidopsis thaliana] ref|NP_850589.1| transcription factor TCP4 [Arabidopsis thaliana] ref|NP_001189896.1| transcription factor TCP4 [Arabidopsis thaliana] sp|Q8LPR5.1|TCP4_ARATH RecName: Full=Transcription factor TCP4; AltName 9.0e-34
• FL-Next: sp=Transcription factor TCP4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: CYCLOIDEA-like protein 3.43e-09
Complete
sp_v3.0_unigene1689 SustainPine v3.0 900
• AutoFact: DNA-directed RNA polymerase II subunit J n=4 Tax=Poaceae RepID=B4FJS1_MAIZE 1.99993e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene1707 SustainPine v3.0 1286
• AutoFact: Sex determining protein n=3 Tax=Mus musculus musculus RepID=O35861_MOUSE 4.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transposon protein, putative, CACTA, En/Spm sub-class, expressed 3.394e-17
Complete
sp_v3.0_unigene1708 SustainPine v3.0 889
• AutoFact: Histone H2A n=1 Tax=Picea sitchensis RepID=A9NXR7_PICSI 5.00264e-43
• FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene1744 SustainPine v3.0 1764
• AutoFact: KANADI like transcription factor n=3 Tax=Vitis vinifera RepID=C5DB44_VITVI 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Myb-like DNA-binding domain, SHAQKYF class family protein, expressed 4.962e-12
C-terminus
sp_v3.0_unigene1746 SustainPine v3.0 1416
• AutoFact: transcription factor DcMYB3-1 [Daucus carota] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: MYB transcription factor 1.378e-11
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain