Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene681 SustainPine v3.0 1639
• AutoFact: RVT_2 domain containing protein 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 8.754e-19
C-terminus
sp_v3.0_unigene704 SustainPine v3.0 2043
• AutoFact: No apical meristem (NAM) protein n=1 Tax=Medicago truncatula RepID=A2Q3I9_MEDTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: NAC domain protein, IPR003441 0.0
Complete
sp_v3.0_unigene740 SustainPine v3.0 3072
• AutoFact: Transcription factor viviparous 1 n=1 Tax=Picea abies RepID=Q9FVK1_PICAB 0.0
• FL-Next: tr=Transcription factor viviparous 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Transcription factor viviparous 1 0.0
Complete
sp_v3.0_unigene793 SustainPine v3.0 2087
• AutoFact: Helix-loop-helix protein 1A n=1 Tax=Pinus taeda RepID=Q9SQ79_PINTA 0.0
• FL-Next: tr=Helix-loop-helix protein 1A; Pinus taeda (Loblolly pine). 0.0
• Sma3: BHLH transcription factor 1.896e-10
C-terminus
sp_v3.0_unigene800 SustainPine v3.0 3221
• AutoFact: ARID/BRIGHT DNA-binding domain-containing protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TE17_PHYPA 0.0
• FL-Next: sp=AT-rich interactive domain-containing protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ARID/BRIGHT DNA-binding domain-containing protein 2.308e-08
Complete
sp_v3.0_unigene805 SustainPine v3.0 1595
• AutoFact: Gag/pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9C5V1_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative polyprotein 1.296e-10
Putative C-terminus
sp_v3.0_unigene806 SustainPine v3.0 2318
• AutoFact: Putative auxin response factor 10/16/17 (Fragment) n=1 Tax=Cycas rumphii RepID=E1UHY1_CYCRU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Auxin response factor, putative 1.342e-12
Complete
sp_v3.0_unigene825 SustainPine v3.0 2405
• AutoFact: Nfrkb, putative n=2 Tax=rosids RepID=B9T3J5_RICCO 0.0
• FL-Next: tr=Nfrkb, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene835 SustainPine v3.0 731
• AutoFact: histone H4 [Hyacinthus orientalis] 4.0e-38
• FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone H4 1.194e-11
Complete
sp_v3.0_unigene846 SustainPine v3.0 647
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RJX9_RICCO 9.80909e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene871 SustainPine v3.0 1276
• AutoFact: histone H4 [Hyacinthus orientalis] 4.0e-38
• FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene878 SustainPine v3.0 1323
• AutoFact: DEMETER protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=Transcriptional activator DEMETER; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Repressor of silencing 1 6.505e-09
C-terminus
sp_v3.0_unigene881 SustainPine v3.0 1966
• AutoFact: KANADI-like transcription factor FEATHERED [Ipomoea nil] dbj|BAE73188.1| KANADI-like transcription factor FEATHERED [Ipomoea nil] 1.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Myb-like DNA-binding domain, SHAQKYF class family protein 4.36e-09
C-terminus
sp_v3.0_unigene885 SustainPine v3.0 2565
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDJ8_RICCO 0.0
• FL-Next: sp=Flap endonuclease GEN-like 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Flap endonuclease GEN-like 1 2.643e-09
Complete
sp_v3.0_unigene892 SustainPine v3.0 676
• AutoFact: Aprataxin, putative n=1 Tax=Ricinus communis RepID=B9SWY0_RICCO 0.0
• FL-Next: sp=Transcription factor bHLH140; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene894 SustainPine v3.0 2360
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RMJ9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA binding protein GT-1 3.335e-09
Complete
sp_v3.0_unigene917 SustainPine v3.0 2119
• AutoFact: Chromodomain helicase DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SCD7_RICCO 9.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SNF2 family DNA-dependent ATPase 3.36e-07
Putative Complete
sp_v3.0_unigene935 SustainPine v3.0 1366
• AutoFact: Unassigned protein
• FL-Next: tr=Dof transcription factor; Pinus pinaster (Maritime pine). 0.0
• Sma3: Dof transcription factor 2.924e-06
C-terminus
sp_v3.0_unigene956 SustainPine v3.0 1092
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RFB6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene981 SustainPine v3.0 1987
• AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain