Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene179 SustainPine v3.0 2001
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9STJ6_RICCO 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein-like 8.063e-23
Complete
sp_v3.0_unigene184 SustainPine v3.0 2539
AutoFact: Putative auxin response factor 10/16/17 (Fragment) n=1 Tax=Cycas rumphii RepID=E1UHY1_CYCRU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Auxin response factor, putative 2.591e-12
Complete
sp_v3.0_unigene200 SustainPine v3.0 3499
AutoFact: Myc2 bHLH protein n=2 Tax=Vitis vinifera RepID=A6NAB4_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA binding protein, putative 5.157e-06
Complete
sp_v3.0_unigene213 SustainPine v3.0 2682
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RYZ7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ankyrin protein kinase-like 5.209e-18
Complete
sp_v3.0_unigene232 SustainPine v3.0 1686
AutoFact: Cytochrome P450 monooxygenase CYP736B n=3 Tax=Vitis RepID=C0KLZ0_9ROSI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cytochrome P450 6.774e-33
Complete
sp_v3.0_unigene239 SustainPine v3.0 3061
AutoFact: Probable carboxylesterase 11 n=2 Tax=Arabidopsis RepID=CXE11_ARATH 0.0
FL-Next: tr=PrMC3; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Sma3: CXE carboxylesterase 1.5e-06
Complete
sp_v3.0_unigene241 SustainPine v3.0 1733
AutoFact: pre-mRNA processing factor [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pre-mrna splicing factor 4.959e-09
N-terminus
sp_v3.0_unigene245 SustainPine v3.0 1743
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 4.285e-27
Putative C-terminus
sp_v3.0_unigene252 SustainPine v3.0 1729
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 2.211e-18
Complete
sp_v3.0_unigene262 SustainPine v3.0 778
AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 5.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 super family 1.757e-18
Putative N-terminus
sp_v3.0_unigene267 SustainPine v3.0 1747
AutoFact: Unassigned protein
FL-Next: sp=DNA mismatch repair protein MSH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene320 SustainPine v3.0 2420
AutoFact: Wax2_C multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_268, whole genome shotgun sequence 6.541e-20
Complete
sp_v3.0_unigene321 SustainPine v3.0 2895
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: YT521-B-like family protein, expressed 4.162e-11
Complete
sp_v3.0_unigene327 SustainPine v3.0 1894
AutoFact: Caldesmon multi-domain protein 7.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Auxilin-like protein 2.43e-23
Complete
sp_v3.0_unigene333 SustainPine v3.0 1675
AutoFact: tropine dehydrogenase [Arabidopsis thaliana] dbj|BAA98195.1| short chain alcohol dehydrogenase-like [Arabidopsis thaliana] gb|AAO22710.1| putative short chain alcohol dehydrogenase [Arabidopsis thaliana] gb|AAO42448.1| putative short chain alcohol dehydro 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative tropinone reductase 0.0
Complete
sp_v3.0_unigene340 SustainPine v3.0 5840
AutoFact: [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 2.792e-14
Putative Complete
sp_v3.0_unigene392 SustainPine v3.0 1496
AutoFact: terminal acidic SANT 1 [Zea mays] gb|AAV28560.1| terminal acidic SANT 1 [Zea mays] gb|ACG40093.1| terminal acidic SANT 1 [Zea mays] gb|ACR36002.1| unknown [Zea mays] 3.0e-24
FL-Next: Isoform 3 of Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2 0.0
Putative C-terminus
sp_v3.0_unigene408 SustainPine v3.0 725
AutoFact: DUF296 domain containing protein 3.0e-06
Sma3: ESC, putative 2.502e-08
coding
sp_v3.0_unigene412 SustainPine v3.0 3447
AutoFact: Zinc finger, CCCH-type n=1 Tax=Medicago truncatula RepID=A2Q3L5_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zn-finger transcription factor 1.742e-14
Complete
sp_v3.0_unigene428 SustainPine v3.0 2732
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RYZ7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 5.152e-24
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain