Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene681 SustainPine v3.0 1639
AutoFact: RVT_2 domain containing protein 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 8.754e-19
C-terminus
sp_v3.0_unigene704 SustainPine v3.0 2043
AutoFact: No apical meristem (NAM) protein n=1 Tax=Medicago truncatula RepID=A2Q3I9_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 0.0
Complete
sp_v3.0_unigene709 SustainPine v3.0 3272
AutoFact: Pathogenesis-related homeodomain protein [Arabidopsis thaliana] sp|P48785.1|PRH_ARATH RecName: Full=Pathogenesis-related homeodomain protein; Short=PRHA gb|AAA32843.1| homeodomain protein [Arabidopsis thaliana] gb|AAC49836.1| PRHA [Arabidopsis thaliana] e 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene723 SustainPine v3.0 2477
AutoFact: pfkB-type carbohydrate kinase-like protein [Arabidopsis thaliana] gb|AAK32830.1|AF361817_1 At1g06730/F4H5_22 [Arabidopsis thaliana] gb|AEE28029.1| pfkB-type carbohydrate kinase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene731 SustainPine v3.0 1306
AutoFact: anther-specific proline-rich protein APG 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Anther-specific proline-rich protein APG 2.531e-26
Complete
sp_v3.0_unigene754 SustainPine v3.0 1925
AutoFact: Fertilization-independent endosperm (Fragment) n=2 Tax=Hieracium RepID=B1ABR5_HIEPL 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Fertilization-independent endosperm protein 2.907e-19
Complete
sp_v3.0_unigene768 SustainPine v3.0 863
AutoFact: Development related ERF protein n=4 Tax=Oryza sativa RepID=Q0JB99_ORYSJ 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 0.0
Putative Complete
sp_v3.0_unigene770 SustainPine v3.0 1974
AutoFact: Brushy protein, putative n=1 Tax=Ricinus communis RepID=B9RTZ8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene777 SustainPine v3.0 1630
AutoFact: P4H isoform 1 [Arabidopsis thaliana] gb|AAC64297.1| hypothetical protein [Arabidopsis thaliana] gb|AAM15158.1| hypothetical protein [Arabidopsis thaliana] dbj|BAC42340.1| unknown protein [Arabidopsis thaliana] gb|AAP04083.1| unknown protein [Arabidopsis t 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Prolyl 4-hydroxylase alpha subunit, putative 6.543e-20
Complete
sp_v3.0_unigene790 SustainPine v3.0 1244
AutoFact: Auxin-responsive protein IAA9 n=13 Tax=Brassicaceae RepID=IAA9_ARATH 5.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene793 SustainPine v3.0 2087
AutoFact: Helix-loop-helix protein 1A n=1 Tax=Pinus taeda RepID=Q9SQ79_PINTA 0.0
FL-Next: tr=Helix-loop-helix protein 1A; Pinus taeda (Loblolly pine). 0.0
Sma3: BHLH transcription factor 1.896e-10
C-terminus
sp_v3.0_unigene806 SustainPine v3.0 2318
AutoFact: Putative auxin response factor 10/16/17 (Fragment) n=1 Tax=Cycas rumphii RepID=E1UHY1_CYCRU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Auxin response factor, putative 1.342e-12
Complete
sp_v3.0_unigene831 SustainPine v3.0 3335
AutoFact: basic leucine zipper transcription factor-like protein [Arabidopsis thaliana] ref|NP_001031810.1| basic leucine zipper transcription factor-like protein [Arabidopsis thaliana] gb|AAN12977.1| unknown protein [Arabidopsis thaliana] gb|AEE86989.1| basic leuc 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription factor RF2b 3.759e-14
Complete
sp_v3.0_unigene835 SustainPine v3.0 731
AutoFact: histone H4 [Hyacinthus orientalis] 4.0e-38
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 1.194e-11
Complete
sp_v3.0_unigene846 SustainPine v3.0 647
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RJX9_RICCO 9.80909e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene871 SustainPine v3.0 1276
AutoFact: histone H4 [Hyacinthus orientalis] 4.0e-38
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene878 SustainPine v3.0 1323
AutoFact: DEMETER protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Transcriptional activator DEMETER; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Repressor of silencing 1 6.505e-09
C-terminus
sp_v3.0_unigene881 SustainPine v3.0 1966
AutoFact: KANADI-like transcription factor FEATHERED [Ipomoea nil] dbj|BAE73188.1| KANADI-like transcription factor FEATHERED [Ipomoea nil] 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Myb-like DNA-binding domain, SHAQKYF class family protein 4.36e-09
C-terminus
sp_v3.0_unigene885 SustainPine v3.0 2565
AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDJ8_RICCO 0.0
FL-Next: sp=Flap endonuclease GEN-like 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Flap endonuclease GEN-like 1 2.643e-09
Complete
sp_v3.0_unigene892 SustainPine v3.0 676
AutoFact: Aprataxin, putative n=1 Tax=Ricinus communis RepID=B9SWY0_RICCO 0.0
FL-Next: sp=Transcription factor bHLH140; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain