Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene210199 SustainPine v3.0 831
AutoFact: zinc finger protein [Arabidopsis thaliana] 4.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ran GTPase binding protein, putative 3.922e-19
C-terminus
sp_v3.0_unigene210200 SustainPine v3.0 431
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 0.0
FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA topoisomerase 2 0.0
Internal
sp_v3.0_unigene210227 SustainPine v3.0 654
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: WD-repeat protein, putative 7.615e-12
Internal
sp_v3.0_unigene210238 SustainPine v3.0 865
AutoFact: PREDICTED: similar to oligopeptide transporter, putative n=1 Tax=Vitis vinifera RepID=UPI0001985618 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr18 scaffold_122, whole genome shotgun sequence 2.076e-26
C-terminus
sp_v3.0_unigene210244 SustainPine v3.0 503
AutoFact: Heat shock protein 90-1 n=9 Tax=rosids RepID=HS901_ARATH 0.0
FL-Next: tr=GRP94; Pinus taeda (Loblolly pine). 0.0
Sma3: Heat shock protein 90 0.0
Internal
sp_v3.0_unigene210246 SustainPine v3.0 535
AutoFact: Putative auxin response factor 2/1/9 (Fragment) n=1 Tax=Cycas rumphii RepID=E1UHY0_CYCRU 0.0
FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
Sma3: Auxin response factor, putative 3.614e-25
Internal
sp_v3.0_unigene210252 SustainPine v3.0 723
AutoFact: TauD domain containing protein 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene210259 SustainPine v3.0 1208
AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear transcription factor Y subunit A-3 1.149e-09
C-terminus
sp_v3.0_unigene210261 SustainPine v3.0 518
AutoFact: Histone H3 n=3 Tax=Eukaryota RepID=B6SJQ5_MAIZE 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Putative Complete
sp_v3.0_unigene210262 SustainPine v3.0 791
AutoFact: U1 small nuclear ribonucleoprotein 70 kDa, putative n=1 Tax=Ricinus communis RepID=B9S6I9_RICCO 0.0
FL-Next: Isoform Short of U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 0.0
Sma3: U1 snRNP 2.076e-09
Putative C-terminus
sp_v3.0_unigene210264 SustainPine v3.0 531
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 5.0e-24
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2B 1.621e-34
C-terminus
sp_v3.0_unigene210266 SustainPine v3.0 1048
AutoFact: Auxin response factor-like protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GBL7_CUCME 6.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Auxin response factor, putative 1.624e-34
Putative N-terminus
sp_v3.0_unigene210278 SustainPine v3.0 1180
AutoFact: R2R3-Myb5 transcription factor (Fragment) n=2 Tax=Pinus RepID=B1PPT8_PINPS 0.0
FL-Next: tr=R2R3-MYB transcription factor MYB5; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: R2R3-Myb5 transcription factor 0.0
Putative Complete
sp_v3.0_unigene210283 SustainPine v3.0 634
AutoFact: Caffeate O-methyltransferase n=4 Tax=Picea RepID=Q5NDD5_PICAB 0.0
FL-Next: tr=Caffeate O-methyltransferase; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Caffeic acid 3-O-methyltransferase 0.0
N-terminus
sp_v3.0_unigene210285 SustainPine v3.0 1029
AutoFact: ERF transcription factor n=1 Tax=Solanum tuberosum RepID=A4ZX83_SOLTU 7.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 1.31162e-42
Putative C-terminus
sp_v3.0_unigene210300 SustainPine v3.0 1428
AutoFact: Auxin-induced protein 3 n=1 Tax=Pinus taeda RepID=Q7XYT4_PINTA 0.0
FL-Next: tr=Auxin-induced protein 3; Pinus taeda (Loblolly pine). 0.0
Sma3: Auxin-induced protein 3 0.0
Complete
sp_v3.0_unigene210319 SustainPine v3.0 516
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 5.0e-34
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Putative histone H4 0.0
Complete
sp_v3.0_unigene210322 SustainPine v3.0 627
AutoFact: Fruit-ripening protein-like n=2 Tax=Solanum tuberosum RepID=Q2XTC9_SOLTU 2.0e-13
FL-Next: sp=Abscisic stress-ripening protein 2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: Abscisic stress ripening protein 2 8.615e-13
Complete
sp_v3.0_unigene210349 SustainPine v3.0 760
AutoFact: Histone H2A.6 n=6 Tax=Spermatophyta RepID=H2A6_ARATH 4.99997e-41
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene210367 SustainPine v3.0 1129
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 1.0e-34
FL-Next: tr=Putative histone H1; Pinus pinaster (Maritime pine). 0.0
Sma3: Putative histone H1 0.0
Complete

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain