Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene359 SustainPine v3.0 819
AutoFact: ethylene-responsive transcription factor WRI1 [Arabidopsis thaliana] gb|AEE79213.1| ethylene-responsive transcription factor WRI1 [Arabidopsis thaliana] 0.0
FL-Next: tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: AP2 domain-containing transcription factor 0.0
Internal
sp_v3.0_unigene382 SustainPine v3.0 964
AutoFact: ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8RBJ7_SELML 0.0
FL-Next: tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew). 0.0
Sma3: Multidrug/pheromone exporter, MDR family, ABC transporter family 0.0
C-terminus
sp_v3.0_unigene392 SustainPine v3.0 1496
AutoFact: terminal acidic SANT 1 [Zea mays] gb|AAV28560.1| terminal acidic SANT 1 [Zea mays] gb|ACG40093.1| terminal acidic SANT 1 [Zea mays] gb|ACR36002.1| unknown [Zea mays] 3.0e-24
FL-Next: Isoform 3 of Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2 0.0
Putative C-terminus
sp_v3.0_unigene393 SustainPine v3.0 2471
AutoFact: huntingtin interacting protein, putative (EC:2.1.1.43) 3.0e-40
FL-Next: Isoform 2 of Histone-lysine N-methyltransferase ASHH2 OS=Arabidopsis thaliana GN=ASHH2 0.0
Sma3: SET domain protein 3.567e-07
C-terminus
sp_v3.0_unigene403 SustainPine v3.0 1855
AutoFact: DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 4.649e-12
Putative Complete
sp_v3.0_unigene405 SustainPine v3.0 641
AutoFact: TPA_inf: class IV HD-Zip protein HDZ43 [Physcomitrella patens] 1.0e-28
FL-Next: tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Homeobox protein, putative 1.5e-17
N-terminus
sp_v3.0_unigene407 SustainPine v3.0 1149
AutoFact: CDK-activating kinase assembly factor MAT1 [Arabidopsis thaliana] ref|NP_849476.1| CDK-activating kinase assembly factor MAT1 [Arabidopsis thaliana] ref|NP_001078472.1| CDK-activating kinase assembly factor MAT1 [Arabidopsis thaliana] gb|AAO22638.1| unkno 1.0e-28
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Complete
sp_v3.0_unigene408 SustainPine v3.0 725
AutoFact: DUF296 domain containing protein 3.0e-06
Sma3: ESC, putative 2.502e-08
coding
sp_v3.0_unigene412 SustainPine v3.0 3447
AutoFact: Zinc finger, CCCH-type n=1 Tax=Medicago truncatula RepID=A2Q3L5_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Zn-finger transcription factor 1.742e-14
Complete
sp_v3.0_unigene417 SustainPine v3.0 1675
AutoFact: histone-lysine N-methyltransferase ATXR6 [Arabidopsis thaliana] sp|Q9FNE9.1|ATXR6_ARATH RecName: Full=Histone-lysine N-methyltransferase ATXR6; AltName: Full=Protein SET DOMAIN GROUP 34; AltName: Full=Trithorax-related protein 6; Short=TRX-related protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone-lysine N-methyltransferase ATXR6, putative 6.584e-09
Complete
sp_v3.0_unigene423 SustainPine v3.0 1885
AutoFact: Pseudotzain n=3 Tax=Pinaceae RepID=Q40922_PSEMZ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cysteine proteinase 0.0
Complete
sp_v3.0_unigene428 SustainPine v3.0 2732
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RYZ7_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: ATP binding protein, putative 5.152e-24
Complete
sp_v3.0_unigene430 SustainPine v3.0 2856
AutoFact: DNA ligase n=5 Tax=Poaceae RepID=Q7XD67_ORYSJ 0.0
FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
Sma3: DNA ligase 2.014e-40
C-terminus
sp_v3.0_unigene450 SustainPine v3.0 3790
AutoFact: Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8V3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: LIGULELESS1 protein, putative 6.394e-18
Putative C-terminus
sp_v3.0_unigene455 SustainPine v3.0 2109
AutoFact: protein kinase like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: ATP binding protein, putative 3.346e-11
Complete
sp_v3.0_unigene458 SustainPine v3.0 3188
AutoFact: RNA helicase n=1 Tax=Vigna radiata var. radiata RepID=Q9M6R6_VIGRR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 7 2.235e-11
Putative Complete
sp_v3.0_unigene460 SustainPine v3.0 3378
AutoFact: Inositol or phosphatidylinositol kinase, putative n=1 Tax=Ricinus communis RepID=B9RLG3_RICCO 0.0
FL-Next: sp=Probable phosphatidylinositol 4-kinase type 2-beta At1g26270; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Phosphatidylinositol 3-and 4-kinase family-like 9.594e-08
Putative Complete
sp_v3.0_unigene472 SustainPine v3.0 1721
AutoFact: Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SNS7_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 2.959e-21
Complete
sp_v3.0_unigene492 SustainPine v3.0 1466
AutoFact: Tubulin-specific chaperone B, putative n=1 Tax=Ricinus communis RepID=B9ST41_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Tubulin folding cofactor B 4.515e-13
Complete
sp_v3.0_unigene493 SustainPine v3.0 1932
AutoFact: zinc finger protein 4 [Arabidopsis thaliana] sp|Q39263.2|ZFP4_ARATH RecName: Full=Zinc finger protein 4 gb|AAG51296.1|AC026480_3 C2H2-type zinc finger protein, putative [Arabidopsis thaliana] gb|AAK32798.1|AF361630_1 At1g66140/F15E12_19 [Arabidopsis thali 4.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain