Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome

Term: GO:0000786  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene21862 SustainPine v3.0 534
AutoFact: Histone H3 (Fragment) n=1 Tax=Solenopsis invicta RepID=E9IYV7_SOLIN 7.00649e-44
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Putative Complete
sp_v3.0_unigene22849 SustainPine v3.0 699
AutoFact: PREDICTED: histone H2A-like n=2 Tax=Anolis carolinensis RepID=UPI0002038DF2 1.4013e-45
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene23421 SustainPine v3.0 477
AutoFact: Ribosomal protein L37 n=1 Tax=Zea mays RepID=B6SJJ8_MAIZE 3.0e-34
FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L37 0.0
Complete
sp_v3.0_unigene23426 SustainPine v3.0 400
AutoFact: Ribosomal protein L37 n=1 Tax=Eurythoe complanata RepID=A8UGE9_EURCO 4.0e-37
FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L37 0.0
Complete
sp_v3.0_unigene23544 SustainPine v3.0 690
AutoFact: Histone H2B.3 n=9 Tax=Poaceae RepID=H2B3_WHEAT 2.0e-35
FL-Next: sp=Histone H2B; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 4.965e-31
C-terminus
sp_v3.0_unigene23768 SustainPine v3.0 871
AutoFact: Histone H2AX n=7 Tax=Spermatophyta RepID=H2AX_PICAB 4.2039e-45
FL-Next: sp=Histone H2A; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene23814 SustainPine v3.0 893
AutoFact: Histone H3 n=1 Tax=Ostreococcus tauri RepID=Q00YS0_OSTTA 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene24278 SustainPine v3.0 473
AutoFact: Histone H2B n=2 Tax=Nematostella vectensis RepID=A7RQF6_NEMVE 4.0e-34
FL-Next: sp=Histone H2B; Olisthodiscus luteus (Marine phytoflagellate) (Heterosigma akashiwo). 0.0
Sma3: Histone H2B 1.827e-34
Complete
sp_v3.0_unigene25610 SustainPine v3.0 541
AutoFact: PREDICTED: histone cluster 1, H4m n=1 Tax=Rattus norvegicus RepID=UPI0001CF3AFE 2.0e-33
FL-Next: sp=Histone H2A; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene26941 SustainPine v3.0 806
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene28960 SustainPine v3.0 760
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene29272 SustainPine v3.0 729
AutoFact: pfam00271, Helicase_C, Helicase conserved C-terminal domain 6.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 1.359e-29
Putative C-terminus
sp_v3.0_unigene29439 SustainPine v3.0 889
AutoFact: histone H4 [Hyacinthus orientalis] 5.0e-38
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene31131 SustainPine v3.0 500
AutoFact: Histone H2B n=1 Tax=Culex quinquefasciatus RepID=B0X774_CULQU 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 2.184e-34
Complete
sp_v3.0_unigene31159 SustainPine v3.0 367
AutoFact: Ribosomal protein L37 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NDA7_PHYIT 2.0e-33
FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L37 0.0
Complete
sp_v3.0_unigene31184 SustainPine v3.0 1023
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 0.0
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene31284 SustainPine v3.0 434
AutoFact: Histone H3 n=1 Tax=Harpegnathos saltator RepID=E2BMC4_9HYME 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Putative Complete
sp_v3.0_unigene31451 SustainPine v3.0 547
AutoFact: histone H4 [Hyacinthus orientalis] 2.0e-38
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene31464 SustainPine v3.0 456
AutoFact: Histone H3.3 n=3 Tax=Tetrahymena RepID=H33_TETPY 0.0
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene31600 SustainPine v3.0 1084
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 1.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain