Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome

Term: GO:0000786  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene158207 SustainPine v3.0 418
AutoFact: Histone H4, major n=31 Tax=Oligohymenophorea RepID=H41_TETPY 7.0e-34
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 3.046e-09
Putative Complete
sp_v3.0_unigene158648 SustainPine v3.0 522
AutoFact: Histone H2b (Fragment) n=2 Tax=Batrachochytrium dendrobatidis JAM81 RepID=F4NV72_BATDE 6.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.94e-34
Putative Complete
sp_v3.0_unigene158725 SustainPine v3.0 391
AutoFact: Histone H2A n=1 Tax=Ectocarpus siliculosus RepID=D7FWI4_ECTSI 1.0e-37
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative C-terminus
sp_v3.0_unigene158848 SustainPine v3.0 409
AutoFact: Histone H2B n=5 Tax=Neoptera RepID=E0V935_PEDHC 5.0e-34
FL-Next: sp=Histone H2B; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 5.615e-36
C-terminus
sp_v3.0_unigene160029 SustainPine v3.0 492
AutoFact: Histone H2B.5 n=3 Tax=Magnoliophyta RepID=H2B5_WHEAT 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Putative Complete
sp_v3.0_unigene161470 SustainPine v3.0 446
AutoFact: histone H4 [Hyacinthus orientalis] 1.0e-38
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene161952 SustainPine v3.0 232
AutoFact: Histone H3 (Fragment) n=2 Tax=Vitis vinifera RepID=D7U425_VITVI 4.0e-20
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene162431 SustainPine v3.0 187
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 1.0e-13
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 1.331e-16
N-terminus
sp_v3.0_unigene162609 SustainPine v3.0 238
AutoFact: histone H4 [Arabidopsis thaliana] ref|XP_002284162.1| PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] ref|XP_002284573.1| PREDICTED: hypothetical protein isoform 3 [Vitis vinifera] ref|XP_002262866.1| PREDICTED: hypothetical protein isoform 2 [ 1.0e-10
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 5.252e-07
C-terminus
sp_v3.0_unigene162647 SustainPine v3.0 345
AutoFact: Histone H3 n=3 Tax=Eukaryota RepID=B6SJQ5_MAIZE 9.0e-18
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene163269 SustainPine v3.0 375
AutoFact: leucine-rich repeat/extensin [Nicotiana plumbaginifolia] dbj|BAF48664.1| leucine-rich repeat/extensin [Nicotiana plumbaginifolia] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Extensin-like protein 1.038e-31
Internal
sp_v3.0_unigene164026 SustainPine v3.0 386
AutoFact: Single myb histone protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T749_PHYPA 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Single myb histone 9.97e-12
N-terminus
sp_v3.0_unigene164932 SustainPine v3.0 279
AutoFact: Ribosomal protein L37 n=1 Tax=Magnaporthe oryzae 70-15 RepID=A4RCE0_MAGO7 1.0e-27
FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L37 0.0
N-terminus
sp_v3.0_unigene165487 SustainPine v3.0 221
AutoFact: Histone H2B n=9 Tax=Agaricales RepID=H2B_AGABI 3.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 5.04804e-41
Internal
sp_v3.0_unigene165549 SustainPine v3.0 421
AutoFact: histone H4 [Hyacinthus orientalis] 6.0e-39
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene165759 SustainPine v3.0 468
AutoFact: Histone H2B n=9 Tax=Agaricales RepID=H2B_AGABI 4.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.39e-36
N-terminus
sp_v3.0_unigene165961 SustainPine v3.0 442
AutoFact: Histone H2A n=2 Tax=Agaricales RepID=B0DBI4_LACBS 2.0e-38
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene166151 SustainPine v3.0 495
AutoFact: Histone H2B n=9 Tax=Agaricales RepID=H2B_AGABI 3.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.378e-34
Putative Complete
sp_v3.0_unigene166267 SustainPine v3.0 294
AutoFact: Histone H2A n=1 Tax=Sorghum bicolor RepID=C5YYL4_SORBI 1.0e-15
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene166327 SustainPine v3.0 535
AutoFact: PREDICTED: histone H3-like n=1 Tax=Oryctolagus cuniculus RepID=UPI0001CE1C55 9.00054e-42
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3.2 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain