Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: nucleosome

Term: GO:0000786  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene144126 SustainPine v3.0 329
AutoFact: Histone H3 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LR62_9ALVE 6.0e-06
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 1.152e-29
Putative C-terminus
sp_v3.0_unigene144194 SustainPine v3.0 390
AutoFact: Histone H2B n=2 Tax=Volvox carteri f. nagariensis RepID=D8TP19_VOLCA 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 4.239e-34
C-terminus
sp_v3.0_unigene144546 SustainPine v3.0 383
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 3.99931e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 6.231e-36
Putative Complete
sp_v3.0_unigene144570 SustainPine v3.0 513
AutoFact: Histone H2B.5 n=3 Tax=Magnoliophyta RepID=H2B5_WHEAT 5.60519e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 2.725e-36
Putative Complete
sp_v3.0_unigene144764 SustainPine v3.0 1073
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 1.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene144806 SustainPine v3.0 720
AutoFact: Histone H3 n=3 Tax=Eukaryota RepID=B6SJQ5_MAIZE 0.0
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene144818 SustainPine v3.0 608
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 3.0e-22
FL-Next: tr=Putative histone H1; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H1 0.0
Internal
sp_v3.0_unigene144846 SustainPine v3.0 396
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 2.188e-31
Putative Complete
sp_v3.0_unigene144879 SustainPine v3.0 332
AutoFact: histone cluster 1, H4-like [Danio rerio] gb|AAI22276.1| Zgc:153409 [Danio rerio] 3.0e-34
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 1.127e-11
Putative Complete
sp_v3.0_unigene144931 SustainPine v3.0 486
AutoFact: Histone H3 (Fragment) n=10 Tax=Glycine RepID=Q9FVB2_GLYTA 1.0e-09
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 1.408e-07
Putative C-terminus
sp_v3.0_unigene145045 SustainPine v3.0 528
AutoFact: Histone H3 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TNQ7_PHYPA 0.0
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
Putative Complete
sp_v3.0_unigene145090 SustainPine v3.0 308
AutoFact: Histone H1 linker n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTA3_PHYPA 7.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 linker 5.359e-13
Internal
sp_v3.0_unigene145105 SustainPine v3.0 347
AutoFact: Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI 5.0e-19
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus
sp_v3.0_unigene145137 SustainPine v3.0 765
AutoFact: Histone H1-II n=2 Tax=Volvox carteri RepID=H12_VOLCA 2.0e-06
FL-Next: sp=Histone H1-II; Volvox carteri (Green alga). 0.0
Sma3: Histone H1 2.27403e-41
Complete
sp_v3.0_unigene145165 SustainPine v3.0 447
AutoFact: histone H4 [Hyacinthus orientalis] 1.0e-38
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene145170 SustainPine v3.0 555
AutoFact: Histone H2A (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q5YJR4_HYAOR 4.0e-33
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene145302 SustainPine v3.0 699
AutoFact: Histone H1-like protein (Fragment) n=15 Tax=Picea sitchensis RepID=E0ZG68_PICSI 2.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
N-terminus
sp_v3.0_unigene145353 SustainPine v3.0 435
AutoFact: Histone H2A n=3 Tax=Andropogoneae RepID=C5XAT9_SORBI 3.0e-19
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene145423 SustainPine v3.0 763
AutoFact: RecName: Full=Histone H4 type VIII pdb|2HIO|D Chain D, Histone Octamer (Chicken), Chromosomal Protein gb|AAC60002.1| histone H4-VIII [Gallus gallus] 1.0e-32
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 1.194e-11
Complete
sp_v3.0_unigene145462 SustainPine v3.0 603
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 2.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 9.472e-07
N-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain