Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome

Term: GO:0000786  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene110889 SustainPine v3.0 348
AutoFact: DNA helicase INO80 complex-like 1 n=1 Tax=Arabidopsis thaliana RepID=F4J277_ARATH 0.0
FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 9.252e-19
Internal
sp_v3.0_unigene112180 SustainPine v3.0 499
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 9.0e-34
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2B 8.886e-34
C-terminus
sp_v3.0_unigene117515 SustainPine v3.0 215
AutoFact: Histone H2A n=2 Tax=Selaginella moellendorffii RepID=D8RG98_SELML 2.0e-22
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative C-terminus
sp_v3.0_unigene126176 SustainPine v3.0 582
AutoFact: leucine-rich repeat extensin-like protein 3 [Arabidopsis thaliana] sp|Q9T0K5.1|LRX3_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 3; Short=AtLRX3; Short=LRR/EXTENSIN3; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Receptor protein kinase; Pinus sylvestris (Scots pine). 0.0
Sma3: Extensin-like protein 3.313e-28
Internal
sp_v3.0_unigene126442 SustainPine v3.0 199
AutoFact: putative chromatin complex subunit A101 [Oryza sativa Japonica Group] 1.0e-15
FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SWI2/SNF2-like protein 1.041e-12
Internal
sp_v3.0_unigene126819 SustainPine v3.0 1238
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene126969 SustainPine v3.0 980
AutoFact: Histone H2B.3 n=41 Tax=Spermatophyta RepID=H2B3_ARATH 4.99983e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.463e-33
Complete
sp_v3.0_unigene127008 SustainPine v3.0 1257
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene127090 SustainPine v3.0 937
AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 2.00386e-43
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2B 7.465e-36
Putative Complete
sp_v3.0_unigene127221 SustainPine v3.0 1040
AutoFact: Histone H3 n=3 Tax=Eukaryota RepID=B6SJQ5_MAIZE 0.0
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene127330 SustainPine v3.0 1359
AutoFact: FK506 binding-like protein n=5 Tax=Picea sitchensis RepID=A9P2H9_PICSI 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Rotamase 1.178e-16
Complete
sp_v3.0_unigene127388 SustainPine v3.0 1253
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 1.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene127456 SustainPine v3.0 794
AutoFact: Histone H1-like protein (Fragment) n=15 Tax=Picea sitchensis RepID=E0ZG68_PICSI 4.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
N-terminus
sp_v3.0_unigene127466 SustainPine v3.0 992
AutoFact: NADH-dependent hydroxypyruvate reductase [Pachysandra terminalis] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative C-terminus
sp_v3.0_unigene127487 SustainPine v3.0 589
AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 9.00054e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 6.485e-33
Putative Complete
sp_v3.0_unigene127591 SustainPine v3.0 684
AutoFact: Putative histone H1 n=2 Tax=Pinaceae RepID=Q84L42_PINPS 9.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
N-terminus
sp_v3.0_unigene127596 SustainPine v3.0 646
AutoFact: Histone H2AX n=7 Tax=Spermatophyta RepID=H2AX_PICAB 4.00001e-41
FL-Next: sp=Histone H2A; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene127598 SustainPine v3.0 639
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 4.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.282e-34
C-terminus
sp_v3.0_unigene127737 SustainPine v3.0 1014
AutoFact: Histone H2AX n=7 Tax=Spermatophyta RepID=H2AX_PICAB 3.0e-20
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative Complete
sp_v3.0_unigene127863 SustainPine v3.0 837
AutoFact: Histone H1-like protein (Fragment) n=15 Tax=Picea sitchensis RepID=E0ZG68_PICSI 5.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain