Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome

Term: GO:0000786  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene74502 SustainPine v3.0 315
AutoFact: Histone H3 n=3 Tax=Eukaryota RepID=D7KSR1_ARALL 3.0e-15
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 3.84e-23
Putative N-terminus
sp_v3.0_unigene74701 SustainPine v3.0 394
AutoFact: Ribosomal protein L37 n=1 Tax=Moniliophthora perniciosa FA553 RepID=E2LSH3_MONPE 7.0e-31
FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L37 0.0
Putative Complete
sp_v3.0_unigene75861 SustainPine v3.0 471
AutoFact: Histone H3 n=3 Tax=Agaricales RepID=B0DIH1_LACBS 5.99756e-43
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene76198 SustainPine v3.0 369
AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.282e-34
C-terminus
sp_v3.0_unigene76619 SustainPine v3.0 321
AutoFact: RAD26-like SNF2 family DNA-dependent ATPase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D7Q2_LACBS 1.0e-24
FL-Next: tr=GAGA-binding transcriptional activator; Pinus taeda (Loblolly pine). 0.0
Sma3: SNF2 super family 3.206e-32
Putative C-terminus
sp_v3.0_unigene76659 SustainPine v3.0 404
AutoFact: PREDICTED: histone cluster 1, H2ae-like n=1 Tax=Rattus norvegicus RepID=UPI0001CF3ADA 3.0e-37
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene77497 SustainPine v3.0 427
AutoFact: Histone H4 n=7 Tax=Neoptera RepID=E0VXR9_PEDHC 2.0e-33
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene77779 SustainPine v3.0 359
AutoFact: Histone H3 n=3 Tax=Agaricales RepID=B0DIH1_LACBS 4.0e-36
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene78624 SustainPine v3.0 246
AutoFact: Histone H4 n=1 Tax=Camellia sinensis RepID=F4YF87_CAMSI 9.0e-13
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 2.799e-09
Putative N-terminus
sp_v3.0_unigene79373 SustainPine v3.0 376
AutoFact: Histone H3 n=3 Tax=Agaricales RepID=B0DIH1_LACBS 9.0e-16
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene79581 SustainPine v3.0 192
AutoFact: Histone H3 n=1 Tax=Zea mays RepID=B6T1G0_MAIZE 3.0e-06
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 9.023e-06
C-terminus
sp_v3.0_unigene79823 SustainPine v3.0 261
AutoFact: pre-mRNA processing factor 38 [Drosophila melanogaster] gb|AAM50703.1| GM13395p [Drosophila melanogaster] gb|AAF58976.3| pre-mRNA processing factor 38 [Drosophila melanogaster] gb|ACL84434.1| CG30342-PA [synthetic construct] gb|ACL89386.1| CG30342-PA [syn 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene81242 SustainPine v3.0 317
AutoFact: PREDICTED: similar to Late histone H2A.2.2 n=2 Tax=Hydra magnipapillata RepID=UPI0001924B8D 2.0e-23
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 3.157e-09
N-terminus
sp_v3.0_unigene81548 SustainPine v3.0 159
AutoFact: Ribosomal protein L37 n=4 Tax=Tremellaceae RepID=E6R2B3_CRYGW 1.0e-11
FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L37 0.0
Internal
sp_v3.0_unigene82081 SustainPine v3.0 515
AutoFact: histone H1/green fluorescent protein S65T variant fusion protein [Expression vector pMF280] 6.0e-14
Sma3: Histone H1 2.274e-21
coding
sp_v3.0_unigene83011 SustainPine v3.0 445
coding
sp_v3.0_unigene83643 SustainPine v3.0 282
AutoFact: HC2 multi-domain protein 3.0e-08
coding
sp_v3.0_unigene86619 SustainPine v3.0 326
AutoFact: HC2 multi-domain protein 2.0e-11
coding
sp_v3.0_unigene86716 SustainPine v3.0 303
AutoFact: BASP1 multi-domain protein 4.0e-12
Sma3: Histone H1 4.623e-38
coding
sp_v3.0_unigene93612 SustainPine v3.0 1821
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9HEW0_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromatin remodeling complex subunit 9.648e-28
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain