Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome

Term: GO:0000786  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene50327 SustainPine v3.0 883
AutoFact: histone H4 [Hyacinthus orientalis] 6.0e-34
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene50816 SustainPine v3.0 765
AutoFact: Histone H4 n=1 Tax=Ostreococcus tauri RepID=Q01FF9_OSTTA 4.0e-06
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 5.252e-07
Putative Complete
sp_v3.0_unigene52107 SustainPine v3.0 313
AutoFact: Ribosomal protein L37 n=1 Tax=Picea sitchensis RepID=A9NJS5_PICSI 2.0e-36
FL-Next: sp=Ribosomal protein L37; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ribosomal protein L37 0.0
Putative N-terminus
sp_v3.0_unigene52142 SustainPine v3.0 249
AutoFact: PREDICTED: histone H4 replacement-like [Bos taurus] gb|DAA13862.1| histone H4 replacement-like [Bos taurus] 1.0e-13
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 1.229e-11
N-terminus
sp_v3.0_unigene52183 SustainPine v3.0 155
AutoFact: Histone domain containing protein 3.0e-09
FL-Next: sp=Histone H2A; Pinus taeda (Loblolly pine). 0.0
Sma3: Histone H2A 0.0
Internal
sp_v3.0_unigene52546 SustainPine v3.0 337
AutoFact: Histone H1 subtype 7 n=4 Tax=Pisum sativum RepID=Q4A196_PEA 5.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene53064 SustainPine v3.0 356
AutoFact: histone-like protein [Fritillaria liliacea] 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 1.813e-26
Putative N-terminus
sp_v3.0_unigene53199 SustainPine v3.0 429
AutoFact: Single myb histone 4 n=2 Tax=Zea mays RepID=Q6WLH2_MAIZE 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Single myb histone protein 3.818e-08
Putative N-terminus
sp_v3.0_unigene53212 SustainPine v3.0 384
AutoFact: Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI 2.0e-09
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene53546 SustainPine v3.0 365
AutoFact: Histone H2B protein (Fragment) n=1 Tax=Pinus pinaster RepID=Q8VX93_PINPS 8.0e-09
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2B 1.695e-23
Putative N-terminus
sp_v3.0_unigene53729 SustainPine v3.0 389
AutoFact: Histone H2B n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MWT0_ARALL 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.089e-34
C-terminus
sp_v3.0_unigene54144 SustainPine v3.0 177
AutoFact: histone-like protein [Fritillaria liliacea] 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 4.40568e-42
Putative N-terminus
sp_v3.0_unigene55246 SustainPine v3.0 334
AutoFact: PREDICTED: histone cluster 1, H2bl-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBC017 9.94922e-44
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Putative N-terminus
sp_v3.0_unigene55916 SustainPine v3.0 370
AutoFact: Histone H2A (Fragment) n=1 Tax=Arabidopsis thaliana RepID=Q43286_ARATH 7.0e-21
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
N-terminus
sp_v3.0_unigene56231 SustainPine v3.0 412
AutoFact: Histone H2B n=2 Tax=Chlamydomonas reinhardtii RepID=A8IW75_CHLRE 3.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 3.581e-31
Putative Complete
sp_v3.0_unigene56436 SustainPine v3.0 273
AutoFact: Histone H4 (ISS) [Ostreococcus tauri] emb|CAL50535.1| Histone H4 (ISS) [Ostreococcus tauri] 1.0e-22
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 1.194e-11
Putative Complete
sp_v3.0_unigene56642 SustainPine v3.0 209
AutoFact: PREDICTED: histone H3.3B-like n=1 Tax=Rattus norvegicus RepID=UPI00002519F5 5.0e-13
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 7.897e-15
Internal
sp_v3.0_unigene57133 SustainPine v3.0 361
AutoFact: histone H4 [Hyacinthus orientalis] 5.0e-33
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Putative Complete
sp_v3.0_unigene57663 SustainPine v3.0 478
AutoFact: histone H4 [Hyacinthus orientalis] 1.0e-34
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 0.0
Complete
sp_v3.0_unigene57912 SustainPine v3.0 281
AutoFact: histone H3 [Arabidopsis thaliana] gb|AEE87156.1| histone H3 [Arabidopsis thaliana] 3.0e-20
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain