Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleosome

Term: GO:0000786  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene40397 SustainPine v3.0 521
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Monodelphis domestica RepID=UPI00020F6110 4.0e-22
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
C-terminus
sp_v3.0_unigene40653 SustainPine v3.0 414
AutoFact: leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precur 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Extensin-like protein 7.47e-29
Putative N-terminus
sp_v3.0_unigene42109 SustainPine v3.0 572
AutoFact: histone h4 [Oryza sativa Indica Group] 1.0e-14
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 2.731e-09
C-terminus
sp_v3.0_unigene42263 SustainPine v3.0 915
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 4.99997e-41
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene42264 SustainPine v3.0 973
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 8.00001e-42
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene42265 SustainPine v3.0 1088
AutoFact: Histone H2A n=15 Tax=Embryophyta RepID=A5AKG7_VITVI 9.99967e-42
FL-Next: sp=Histone H2A; Vitis vinifera (Grape). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene42279 SustainPine v3.0 802
AutoFact: Histone H3 n=1 Tax=Oryza sativa Indica Group RepID=A2Y8W0_ORYSI 5.0e-27
FL-Next: sp=Histone H3; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene42317 SustainPine v3.0 502
AutoFact: GF20391 n=4 Tax=Coelomata RepID=B3N2H1_DROAN 5.0e-30
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 1.127e-11
C-terminus
sp_v3.0_unigene42354 SustainPine v3.0 748
AutoFact: Histone H2B.5 n=3 Tax=Magnoliophyta RepID=H2B5_WHEAT 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.463e-33
Complete
sp_v3.0_unigene42591 SustainPine v3.0 1311
AutoFact: MYB transcription factor MYB107 [Glycine max] 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Single myb histone 3.515e-11
Putative Complete
sp_v3.0_unigene43412 SustainPine v3.0 1017
AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 9.99995e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene46129 SustainPine v3.0 928
AutoFact: PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B 0.0
FL-Next: sp=Histone H3; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H3 0.0
Complete
sp_v3.0_unigene46130 SustainPine v3.0 561
AutoFact: putative transcriptional regulator [Arabidopsis thaliana] 0.0
FL-Next: sp=ATP-dependent helicase BRM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromatin remodeling complex subunit 3.709e-32
Internal
sp_v3.0_unigene46429 SustainPine v3.0 489
AutoFact: Histone H2B (Fragment) n=1 Tax=Asparagus officinalis RepID=Q43724_ASPOF 5.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.364e-35
C-terminus
sp_v3.0_unigene46432 SustainPine v3.0 167
AutoFact: Histone-like protein n=10 Tax=Fritillaria RepID=O22648_FRIAG 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative histone H1 4.711e-09
Internal
sp_v3.0_unigene46780 SustainPine v3.0 916
AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative histone H4 0.0
Complete
sp_v3.0_unigene48488 SustainPine v3.0 451
AutoFact: PREDICTED: histone H4-like n=1 Tax=Pan troglodytes RepID=UPI00020E3732 1.0e-05
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene49501 SustainPine v3.0 197
AutoFact: Extensin-like protein n=2 Tax=Arabidopsis RepID=O49448_ARATH 2.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Extensin-like protein 2.105e-23
Internal
sp_v3.0_unigene49560 SustainPine v3.0 801
AutoFact: Histone H2A n=2 Tax=Physcomitrella patens subsp. patens RepID=A9S412_PHYPA 9.94922e-44
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
Complete
sp_v3.0_unigene49562 SustainPine v3.0 411
AutoFact: Histone H2A n=1 Tax=Ectocarpus siliculosus RepID=D7FWI4_ECTSI 1.0e-23
FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2A 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain