Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.

Source: Description from FL-Next


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene69985 SustainPine v3.0 418
AutoFact: RVT_1 domain containing protein 7.0e-11
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative C-terminus
sp_v3.0_unigene69994 SustainPine v3.0 472
AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Sciadopitys verticillata RepID=Q56GF7_SCIVE 2.0e-23
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.8e-10
Putative Complete
sp_v3.0_unigene70015 SustainPine v3.0 396
AutoFact: Gag-pol polyprotein n=1 Tax=Solanum lycopersicum RepID=E6Y5Q2_SOLLC 5.0e-37
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 4.547e-27
Putative Complete
sp_v3.0_unigene70033 SustainPine v3.0 424
AutoFact: Reverse transcriptase family protein n=1 Tax=Asparagus officinalis RepID=Q2AA48_ASPOF 6.0e-36
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.873e-10
N-terminus
sp_v3.0_unigene70057 SustainPine v3.0 280
AutoFact: RVT_1 domain containing protein 1.0e-05
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene70135 SustainPine v3.0 383
AutoFact: F15O4.13 n=1 Tax=Arabidopsis thaliana RepID=Q9LQH2_ARATH 1.0e-23
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 8.06e-09
Putative C-terminus
sp_v3.0_unigene70273 SustainPine v3.0 266
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 7.0e-20
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene70362 SustainPine v3.0 364
AutoFact: RVT_1 domain containing protein 2.0e-17
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.452e-12
Putative C-terminus
sp_v3.0_unigene70659 SustainPine v3.0 353
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 5.0e-25
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 3.172e-10
Putative C-terminus
sp_v3.0_unigene70745 SustainPine v3.0 361
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=O82684_GINBI 1.0e-34
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 0.0
C-terminus
sp_v3.0_unigene70937 SustainPine v3.0 407
AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 1.0e-22
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Gag-Pol polyprotein 2.724e-12
C-terminus
sp_v3.0_unigene71011 SustainPine v3.0 276
AutoFact: retrotransposon protein [Beta vulgaris] 4.0e-16
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
N-terminus
sp_v3.0_unigene71045 SustainPine v3.0 372
AutoFact: Mutant gag-pol polyprotein n=2 Tax=Pisum sativum RepID=E7BQD6_PEA 2.0e-38
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.129e-24
Putative N-terminus
sp_v3.0_unigene71188 SustainPine v3.0 360
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 3.0e-17
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative C-terminus
sp_v3.0_unigene71485 SustainPine v3.0 339
AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 2.0e-29
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.475e-27
Putative N-terminus
sp_v3.0_unigene71560 SustainPine v3.0 278
AutoFact: RVT_1 domain containing protein 5.0e-09
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 5.4e-06
Putative C-terminus
sp_v3.0_unigene71795 SustainPine v3.0 281
AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 5.0e-24
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.421e-40
Putative N-terminus
sp_v3.0_unigene72143 SustainPine v3.0 341
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 5.0e-31
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
N-terminus
sp_v3.0_unigene72314 SustainPine v3.0 303
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Taxus baccata RepID=Q56GF5_TAXBA 3.0e-23
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 1.38e-25
Internal
sp_v3.0_unigene72835 SustainPine v3.0 317
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA 5.0e-21
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Reverse transcriptase 2.333e-09
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain