Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: copia-type polyprotein

Source: Description from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene70919 SustainPine v2.0 313
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: copia-type polyprotein 4.51905e-16
Internal
sp_v2.0_unigene70943 SustainPine v2.0 298
AutoFact: rve domain containing protein 3.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 3.98257e-27
Internal
sp_v2.0_unigene72254 SustainPine v2.0 284
AutoFact: Copia-type polyprotein n=1 Tax=Glycine max RepID=C0JJI2_SOYBN 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 3.42161e-20
Internal
sp_v2.0_unigene72467 SustainPine v2.0 423
AutoFact: GK15001 gene product from transcript GK15001-RA 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 4.67786e-12
Internal
sp_v2.0_unigene72742 SustainPine v2.0 355
AutoFact: Integrase n=1 Tax=Cucumis melo subsp. melo RepID=A6YTD9_CUCME 2.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 6.80028e-15
Internal
sp_v2.0_unigene72827 SustainPine v2.0 369
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 1.55608e-20
Internal
sp_v2.0_unigene73392 SustainPine v2.0 461
AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 5.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 4.03555e-24
Putative C-terminus
sp_v2.0_unigene73640 SustainPine v2.0 465
AutoFact: copia-like retrotransposable element [Arabidopsis thaliana] 3.0e-20
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 1.46548e-25
Internal
sp_v2.0_unigene73880 SustainPine v2.0 435
AutoFact: Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 2.89836e-23
Internal
sp_v2.0_unigene76009 SustainPine v2.0 465
AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 6.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 9.74692e-25
Internal
sp_v2.0_unigene76483 SustainPine v2.0 349
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 3.75755e-19
C-terminus
sp_v2.0_unigene83354 SustainPine v2.0 538
AutoFact: Gag-pol polyprotein, putative [Solanum demissum] 4.99997e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 0.0
Putative C-terminus
sp_v2.0_unigene84298 SustainPine v2.0 547
AutoFact: Putative gag-pol polyprotein (Fragment) n=1 Tax=Picea abies RepID=B2KZG9_PICAB 3.0e-32
FL-Next: tr=Copia-type polyprotein, putative; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: copia-type polyprotein 5.90692e-32
Putative C-terminus
sp_v2.0_unigene85948 SustainPine v2.0 319
AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 6.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 1.50386e-22
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain