Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Uncharacterised protein family UPF0406

Term: IPR019146  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene49 SustainPine v2.0 1762
• AutoFact: Double-stranded RNA binding protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T6H7_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: double-stranded rna binding protein 0.0
Complete
sp_v2.0_unigene2957 SustainPine v2.0 505
• AutoFact: uncharacterized protein [Arabidopsis thaliana] dbj|BAA97379.1| unnamed protein product [Arabidopsis thaliana] gb|AAM67022.1| unknown [Arabidopsis thaliana] gb|AAO42327.1| unknown protein [Arabidopsis thaliana] gb|AAO64010.1| unknown protein [Arabidopsis t 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uncharacterized protein 0.0
C-terminus
sp_v2.0_unigene10973 SustainPine v2.0 867
• AutoFact: dsRNA-binding protein 2 [Arabidopsis thaliana] sp|Q9SKN2.1|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName: Full=dsRNA-binding protein 2; Short=AtDRB2 gb|AAD20688.1| expressed protein [Arabidopsis thaliana] gb|AAK59481.1| unknown p 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: double-stranded rna-binding protein 2-like 0.0
N-terminus
sp_v2.0_unigene14576 SustainPine v2.0 1232
• AutoFact: Double-stranded RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RH31_RICCO 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: double-stranded rna-binding protein 2-like 0.0
Putative Complete
sp_v2.0_unigene17023 SustainPine v2.0 2407
• AutoFact: double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dsrna-binding protein 3 0.0
Complete
sp_v2.0_unigene26613 SustainPine v2.0 466
• AutoFact: dsRNA-binding protein 5 [Arabidopsis thaliana] sp|Q8GY79.1|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName: Full=dsRNA-binding protein 5; Short=AtDRB5 dbj|BAC42450.1| unknown protein [Arabidopsis thaliana] gb|AAP75803.1| At5g41070 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: double-stranded rna-binding protein 2-like 8.05487e-35
N-terminus
sp_v2.0_unigene34889 SustainPine v2.0 801
• AutoFact: double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dsrna-binding protein 3 0.0
Putative N-terminus
sp_v2.0_unigene36201 SustainPine v2.0 758
• AutoFact: HVSL domain containing protein 7.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: upf0406 protein c16orf57 homolog 0.0
C-terminus
sp_v2.0_unigene40527 SustainPine v2.0 404
• AutoFact: double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] 1.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: double-stranded rna-binding protein 2-like 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain