Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA-binding, CRM domain

Term: IPR001890  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene2426 SustainPine v2.0 1115
AutoFact: CRM family member 3 [Zea mays] gb|ABU96081.1| CRM family member 3 [Zea mays] 0.0
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: chloroplastic group iia intron splicing facilitator crs1 0.0
C-terminus
sp_v2.0_unigene2490 SustainPine v2.0 1144
AutoFact: CRS1_YhbY domain containing protein 1.0e-18
FL-Next: sp=CRS2-associated factor 2, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: crs2-associated factor mitochondrial-like 0.0
C-terminus
sp_v2.0_unigene4206 SustainPine v2.0 1984
AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 4.0e-07
FL-Next: sp=CRS2-associated factor 1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: crs2-associated factor 1 1.45536e-12
C-terminus
sp_v2.0_unigene6096 SustainPine v2.0 455
AutoFact: CRS1_YhbY domain containing protein 3.0e-12
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: crs2-associated factor 1 1.7572e-31
C-terminus
sp_v2.0_unigene8505 SustainPine v2.0 1007
AutoFact: putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] gb|AEE87011.1| putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein containing kh domain protein 0.0
C-terminus
sp_v2.0_unigene11268 SustainPine v2.0 1119
AutoFact: Protein CREG1, putative n=1 Tax=Ricinus communis RepID=B9RUG5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein creg1 0.0
Complete
sp_v2.0_unigene12735 SustainPine v2.0 1180
AutoFact: group II intron splicing factor CRS1-like [Oryza sativa Japonica Group] dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica Group] 1.4013e-45
FL-Next: sp=Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: group ii intron splicing factor crs1-like 0.0
Putative C-terminus
sp_v2.0_unigene20891 SustainPine v2.0 582
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: crs1 domain-containing protein 4.33483e-15
Internal
sp_v2.0_unigene28730 SustainPine v2.0 919
AutoFact: CRS1_YhbY domain containing protein 4.0e-12
FL-Next: sp=CRS2-associated factor 1, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: crs2-associated factor 1 0.0
N-terminus
sp_v2.0_unigene29054 SustainPine v2.0 578
AutoFact: unknow protein [Oryza sativa Japonica Group] gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group] 1.0e-18
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: rna-binding crs1 domain protein 3.69572e-23
N-terminus
sp_v2.0_unigene33418 SustainPine v2.0 1012
AutoFact: unknow protein [Oryza sativa Japonica Group] gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: group ii intron splicing factor crs1-like 0.0
Putative C-terminus
sp_v2.0_unigene35063 SustainPine v2.0 556
AutoFact: Unassigned protein
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: chloroplastic group iia intron splicing facilitator chloroplastic-like 6.79381e-31
Internal
sp_v2.0_unigene37336 SustainPine v2.0 542
AutoFact: CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana] dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36264.1| unknown protein [Arabidopsis thaliana] gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis 1.0e-25
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: chloroplastic group iia intron splicing facilitator chloroplastic-like 4.69569e-32
Internal
sp_v2.0_unigene37565 SustainPine v2.0 560
AutoFact: CRM family member 3A [Arabidopsis thaliana] gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana] 1.0e-39
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: chloroplastic group iia intron splicing facilitator crs1 0.0
Internal
sp_v2.0_unigene37945 SustainPine v2.0 433
AutoFact: CRM family member 2 [Arabidopsis thaliana] gb|AAM97013.1| unknown protein [Arabidopsis thaliana] gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana] gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana] 2.00386e-43
FL-Next: sp=Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: chloroplastic group iia intron splicing facilitator chloroplastic-like 0.0
Internal
sp_v2.0_unigene39635 SustainPine v2.0 241
AutoFact: CRS2-associated factor 1 [Arabidopsis thaliana] sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAK76556.1| unkn 4.0e-25
FL-Next: sp=CRS2-associated factor 1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: crs2-associated factor 1 1.06168e-31
Internal
sp_v2.0_unigene41217 SustainPine v2.0 242
AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 4.0e-26
FL-Next: sp=CRS2-associated factor 1, chloroplastic; Zea mays (Maize). 0.0
Blast2go: crs2-associated factor 1 9.21957e-31
Internal
sp_v2.0_unigene47719 SustainPine v2.0 286
AutoFact: RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana] gb|AAD21483.1| hypothetical protein [Arabidopsis thaliana] gb|AAS49116.1| At2g28480 [Arabidopsis thaliana] dbj|BAE98819.1| hypothetical protein [Arabidopsis thaliana] gb|AEC08129.1| RNA-b 2.0e-16
FL-Next: sp=Uncharacterized CRM domain-containing protein At3g25440, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: uncharacterized crm domain-containing protein 7.04908e-38
Internal
sp_v2.0_unigene48814 SustainPine v2.0 162
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TBI7_VITVI 1.0e-18
FL-Next: sp=CRS2-associated factor 1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: crs2-associated factor 1 6.91071e-23
Internal
sp_v2.0_unigene58385 SustainPine v2.0 314
AutoFact: CRS2-associated factor 2, chloroplastic n=2 Tax=Arabidopsis RepID=CAF2P_ARATH 3.0e-39
FL-Next: sp=CRS2-associated factor 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: crs2-associated factor 2 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain