Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Ribonuclease H domain

Term: IPR002156  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene53724 SustainPine v2.0 459
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 4.0e-31
FL-Next: tr=Similar to Arabidopsis thaliana chromosome II BAC F26H6; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: uncharacterized protein loc100807419 4.02256e-37
Internal
sp_v2.0_unigene54144 SustainPine v2.0 474
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 2.0e-27
FL-Next: tr=Integrase, catalytic region; Ribonuclease H; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Blast2go: retrotransposon unclassified 5.18466e-31
Internal
sp_v2.0_unigene54462 SustainPine v2.0 359
AutoFact: Unassigned protein
FL-Next: sp=Protein TONSOKU; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein brushy 2.26047e-24
Internal
sp_v2.0_unigene58989 SustainPine v2.0 435
AutoFact: Putative gag-pol polyprotein, identical n=2 Tax=Solanum demissum RepID=Q5NRP4_SOLDE 2.0e-26
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: retroelement pol polyprotein 1.38805e-26
Putative N-terminus
sp_v2.0_unigene60006 SustainPine v2.0 976
AutoFact: GEM-like protein 5 [Arabidopsis thaliana] sp|Q9LYV6.1|GEML5_ARATH RecName: Full=GEM-like protein 5 emb|CAB86627.1| ABA-responsive protein-like [Arabidopsis thaliana] gb|AAR20771.1| At5g13200 [Arabidopsis thaliana] gb|AAS92344.1| At5g13200 [Arabidopsis tha 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gem-like protein 4-like 0.0
C-terminus
sp_v2.0_unigene60054 SustainPine v2.0 336
AutoFact: WS0346.C21_E20 WS-SE-N-A-19 Picea glauca cDNA clone WS0346_E20 3, mRNA sequence. 0.0
FL-Next: tr=Similar to Arabidopsis thaliana chromosome II BAC F26H6; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: uncharacterized protein loc100853628 3.02899e-28
Internal
sp_v2.0_unigene61584 SustainPine v2.0 692
AutoFact: RVT_1 domain containing protein 8.0e-09
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: uncharacterized protein loc100259900 0.0
N-terminus
sp_v2.0_unigene62743 SustainPine v2.0 731
AutoFact: GEM-like protein 5 [Arabidopsis thaliana] sp|Q9LYV6.1|GEML5_ARATH RecName: Full=GEM-like protein 5 emb|CAB86627.1| ABA-responsive protein-like [Arabidopsis thaliana] gb|AAR20771.1| At5g13200 [Arabidopsis thaliana] gb|AAS92344.1| At5g13200 [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: aba-responsive protein 0.0
C-terminus
sp_v2.0_unigene64342 SustainPine v2.0 459
AutoFact: Retrotransposon protein, putative, unclassified n=16 Tax=Oryza RepID=Q2R0G5_ORYSJ 4.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100852570 1.48511e-32
C-terminus
sp_v2.0_unigene66369 SustainPine v2.0 308
AutoFact: putative RNase H [Arabidopsis thaliana] 7.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rnase h domain-containing protein 3.3669e-31
Putative N-terminus
sp_v2.0_unigene71072 SustainPine v2.0 423
AutoFact: ABA-responsive protein n=2 Tax=Andropogoneae RepID=B6U8P6_MAIZE 5.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gem-like protein 5 0.0
C-terminus
sp_v2.0_unigene71084 SustainPine v2.0 262
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: af378049_1reverse transcriptase 1.08763e-30
Putative Complete
sp_v2.0_unigene71345 SustainPine v2.0 470
AutoFact: NXRV093_D07_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV093_D07 5' similar to Arabidopsis thaliana sequence At2g06320 putative retroelement pol polyprotein see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100854167 1.55713e-36
Internal
sp_v2.0_unigene71429 SustainPine v2.0 271
AutoFact: RVT_1 domain containing protein 3.0e-10
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 8.96781e-34
Putative N-terminus
sp_v2.0_unigene73151 SustainPine v2.0 397
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 1.0e-31
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 2.99034e-37
Putative N-terminus
sp_v2.0_unigene75069 SustainPine v2.0 564
AutoFact: equilibrative nucleoside transporter 6 [Arabidopsis thaliana] gb|AAL25098.1|AF426402_1 putative equilibrative nucleoside transporter ENT6 [Arabidopsis thaliana] gb|AEE82480.1| equilibrative nucleoside transporter 6 [Arabidopsis thaliana] 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: equilibrative nucleoside transporter 2.12176e-18
C-terminus
sp_v2.0_unigene75746 SustainPine v2.0 317
AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QS58_ORYSJ 3.0e-11
FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 3.6729e-13
Internal
sp_v2.0_unigene84580 SustainPine v2.0 329
AutoFact: 60S ribosomal protein L13a n=3 Tax=Picea RepID=RL13A_PICMA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 60s ribosomal protein l13a 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain