Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Ribonuclease H domain

Term: IPR002156  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene27946 SustainPine v2.0 670
AutoFact: DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta'' 2; Cryptomeria japonica (Japanese cedar) (Cupressus japonica). Plastid; Chloroplast. 0.0
Blast2go: rna polymerase ii largest subunit 0.0
Internal
sp_v2.0_unigene28311 SustainPine v2.0 1627
AutoFact: Equilibrative nucleoside transporter (Fragment) n=1 Tax=Populus trichocarpa RepID=B9INU8_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: equilibrative nucleoside transporter 0.0
Putative N-terminus
sp_v2.0_unigene28783 SustainPine v2.0 1408
AutoFact: nuclease, putative 7.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rnase h domain-containing protein 7.00649e-45
Putative Complete
sp_v2.0_unigene30409 SustainPine v2.0 560
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 2.0e-39
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) ribonuclease h 1.4013e-45
Putative N-terminus
sp_v2.0_unigene32354 SustainPine v2.0 503
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QVH8_ORYSJ 1.0e-38
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00750; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon unclassified 1.4013e-44
Putative Complete
sp_v2.0_unigene32775 SustainPine v2.0 486
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QVH8_ORYSJ 3.0e-39
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00750; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon unclassified 2.8026e-45
Putative C-terminus
sp_v2.0_unigene34093 SustainPine v2.0 1655
AutoFact: BTB and TAZ domain protein 4 [Arabidopsis thaliana] gb|AED98350.1| BTB and TAZ domain protein 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: btb poz and taz domain-containing protein 4-like 0.0
Complete
sp_v2.0_unigene35582 SustainPine v2.0 1479
AutoFact: BTB and TAZ domain protein 4 [Arabidopsis thaliana] gb|AED98350.1| BTB and TAZ domain protein 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein binding 0.0
Complete
sp_v2.0_unigene36387 SustainPine v2.0 568
AutoFact: DUF393 domain containing protein 4.0e-25
FL-Next: sp=DCC family protein At1g52590, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rnase h domain-containing protein 1.31372e-40
Putative Complete
sp_v2.0_unigene38629 SustainPine v2.0 992
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: retrotransposon gag protein 0.0
Internal
sp_v2.0_unigene38638 SustainPine v2.0 606
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: catalytic region ribonuclease h 9.62819e-37
Putative Complete
sp_v2.0_unigene38649 SustainPine v2.0 549
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 0.0
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: gag pol polyprotein 0.0
Putative N-terminus
sp_v2.0_unigene39574 SustainPine v2.0 580
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 8.0e-37
FL-Next: tr=Integrase, catalytic region; Ribonuclease H; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Blast2go: catalytic region ribonuclease h 1.28289e-41
Internal
sp_v2.0_unigene39891 SustainPine v2.0 343
AutoFact: Equilibrative nucleoside transporter (Fragment) n=1 Tax=Populus trichocarpa RepID=B9INU8_POPTR 2.0e-28
FL-Next: tr=Nucleoside transporter, putative; Ricinus communis (Castor bean). 0.0
Blast2go: equilibrative nucleoside transporter 5.5905e-36
Internal
sp_v2.0_unigene41430 SustainPine v2.0 418
AutoFact: rve domain containing protein 2.0e-06
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: hypothetical protein VITISV_002559 [Vitis vinifera] 6.59958e-27
Internal
sp_v2.0_unigene41446 SustainPine v2.0 559
AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 7.0e-30
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: catalytic region ribonuclease h 1.40689e-35
C-terminus
sp_v2.0_unigene46139 SustainPine v2.0 547
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 6.0e-36
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100777486 2.94034e-41
Internal
sp_v2.0_unigene47024 SustainPine v2.0 461
AutoFact: Retrotransposon protein, putative, unclassified n=16 Tax=Oryza RepID=Q2R0G5_ORYSJ 3.0e-36
FL-Next: tr=Similar to Arabidopsis thaliana chromosome II BAC F26H6; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: retrotransposon unclassified 5.73411e-42
Internal
sp_v2.0_unigene51875 SustainPine v2.0 507
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 1.0e-36
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 5.48468e-42
Putative Complete
sp_v2.0_unigene53005 SustainPine v2.0 527
AutoFact: RVT_1 domain containing protein 8.0e-11
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100259900 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain