Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA-binding S4 domain

Term: IPR002942  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene1855 SustainPine v2.0 1529
AutoFact: suppressor of variegation1 causing pseudouridine synthase-like protein [Arabidopsis thaliana] gb|AAM66944.1| unknown [Arabidopsis thaliana] dbj|BAC42334.1| unknown protein [Arabidopsis thaliana] gb|AEC09639.1| suppressor of variegation1 causing pseudourid 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene4492 SustainPine v2.0 1681
AutoFact: RNA pseudourine synthase 5 [Arabidopsis thaliana] sp|Q5M721.2|PUS5_ARATH RecName: Full=RNA pseudourine synthase 5; AltName: Full=RNA pseudouridylate synthase 5; AltName: Full=RNA-uridine isomerase 5 gb|AEE78921.1| RNA pseudourine synthase 5 [Arabidopsis t 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna pseudourine synthase 5 0.0
Complete
sp_v2.0_unigene4779 SustainPine v2.0 2700
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein 0.0
C-terminus
sp_v2.0_unigene7892 SustainPine v2.0 1039
AutoFact: RNA-binding S4 domain-containing protein [Arabidopsis thaliana] gb|AAL24321.1| Unknown protein [Arabidopsis thaliana] gb|AAN65106.1| Unknown protein [Arabidopsis thaliana] gb|AAO00774.1| Unknown protein [Arabidopsis thaliana] gb|AAP42730.1| At1g53120 [Ara 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding s4 domain-containing protein 0.0
C-terminus
sp_v2.0_unigene8342 SustainPine v2.0 1207
AutoFact: putative hemolysin [Arabidopsis thaliana] dbj|BAB01316.1| hemolysin-like [Arabidopsis thaliana] gb|AAM65296.1| hemolysin, putative [Arabidopsis thaliana] gb|AEE77014.1| putative hemolysin [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein yqxc-like 0.0
Complete
sp_v2.0_unigene12479 SustainPine v2.0 767
AutoFact: Tyrosyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RGT2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: tyrosyl-trna synthetase-like 0.0
C-terminus
sp_v2.0_unigene12612 SustainPine v2.0 530
AutoFact: 40S ribosomal protein S9 n=2 Tax=Rhizoctonia solani RepID=A5X2M3_THACU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s9 0.0
Putative C-terminus
sp_v2.0_unigene15428 SustainPine v2.0 1143
AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein 0.0
Complete
sp_v2.0_unigene15444 SustainPine v2.0 725
AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein 0.0
Putative Complete
sp_v2.0_unigene17202 SustainPine v2.0 1346
AutoFact: 40S ribosomal S4 protein [Glycine max] gb|ACU21252.1| unknown [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene19878 SustainPine v2.0 1848
AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein 0.0
Complete
sp_v2.0_unigene22319 SustainPine v2.0 1560
AutoFact: S4/Hsp/ tRNA synthetase RNA-binding domain-containing protein [Arabidopsis thaliana] dbj|BAD42946.1| ribosomal protein-like [Arabidopsis thaliana] gb|ABF83660.1| At5g15750 [Arabidopsis thaliana] gb|AED92201.1| S4/Hsp/ tRNA synthetase RNA-binding domain-co 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene23864 SustainPine v2.0 1416
AutoFact: 40S ribosomal S4 protein [Glycine max] gb|ACU21252.1| unknown [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s4 0.0
Complete
sp_v2.0_unigene23917 SustainPine v2.0 394
AutoFact: 40S ribosomal protein S4 n=12 Tax=rosids RepID=RS4_GOSHI 1.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v2.0_unigene25255 SustainPine v2.0 1124
AutoFact: Ribosomal protein S4 (Fragment) n=1 Tax=Nicotiana tabacum RepID=Q5M9U0_TOBAC 0.0
FL-Next: sp=30S ribosomal protein S4, chloroplastic; Abies firma (Momi fir). Plastid; Chloroplast. 0.0
Blast2go: ribosomal protein s4 0.0
Complete
sp_v2.0_unigene25946 SustainPine v2.0 149
AutoFact: 40S ribosomal protein S4-1 n=2 Tax=rosids RepID=F4IMI7_ARATH 4.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosomal protein s4 2.6927e-24
Internal
sp_v2.0_unigene26334 SustainPine v2.0 1296
AutoFact: 40S ribosomal S4 protein [Glycine max] gb|ACU21252.1| unknown [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene30644 SustainPine v2.0 1180
AutoFact: Ribosomal protein S4 n=1 Tax=Cycas taitungensis RepID=B0BLG9_CYCTA 0.0
FL-Next: sp=30S ribosomal protein S4, chloroplastic; Abies firma (Momi fir). Plastid; Chloroplast. 0.0
Blast2go: ribosomal protein s4 0.0
Putative Complete
sp_v2.0_unigene35837 SustainPine v2.0 922
AutoFact: RNA pseudourine synthase 2 [Arabidopsis thaliana] sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA pseudourine synthase 2, chloroplastic; AltName: Full=RNA pseudouridylate synthase 2; AltName: Full=RNA-uridine isomerase 2; Flags: Precursor gb|AEE35790.1| RNA pseu 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna pseudourine synthase chloroplastic-like 0.0
C-terminus
sp_v2.0_unigene37816 SustainPine v2.0 488
AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna pseudourine synthase 7 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain