Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA polymerase, alpha subunit

Term: IPR000722  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene46942 SustainPine v2.0 225
AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Physcomitrella patens subsp. patens RepID=A9REZ6_PHYPA 2.0e-22
FL-Next: sp=Ubiquitin-activating enzyme E1 3; Triticum aestivum (Wheat). 0.0
Blast2go: ubiquitin activating enzyme e1 2.21482e-27
Internal
sp_v2.0_unigene47703 SustainPine v2.0 382
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RSV5_PHYPA 1.99993e-41
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Putative N-terminus
sp_v2.0_unigene51333 SustainPine v2.0 439
AutoFact: DNA-directed RNA polymerase subunit beta' n=71 Tax=Propionibacterium RepID=RPOC_PROAC 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta'' 2; Pinus lambertiana (Sugar pine). Plastid; Chloroplast. 0.0
Blast2go: dna-directed rna beta subunit 0.0
Internal
sp_v2.0_unigene52427 SustainPine v2.0 376
AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Populus trichocarpa RepID=B9GGR5_POPTR 3.00018e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin-activating enzyme e1 0.0
Internal
sp_v2.0_unigene53284 SustainPine v2.0 335
AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 3.0e-24
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase 5.97193e-24
Internal
sp_v2.0_unigene57645 SustainPine v2.0 383
AutoFact: DNA-directed RNA polymerase n=4 Tax=Agaricomycetidae RepID=D8PLU0_SCHCM 1.0e-25
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii large subunit 1.76891e-29
Internal
sp_v2.0_unigene57924 SustainPine v2.0 316
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Pinus nigra RepID=Q2TUP3_9CONI 2.0e-29
FL-Next: sp=DNA-directed RNA polymerase; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: rna polymerase i largest subunit 1.00325e-34
Internal
sp_v2.0_unigene62563 SustainPine v2.0 407
AutoFact: PREDICTED: similar to cAMP response element-binding protein 5 n=1 Tax=Hydra magnipapillata RepID=UPI0001925AA1 2.0e-07
Blast2go: camp response element-binding protein 5 5.12823e-09
Coding
sp_v2.0_unigene62590 SustainPine v2.0 655
AutoFact: Ferritin n=1 Tax=Picea sitchensis RepID=B8LPN3_PICSI 0.0
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chloroplast precursor 0.0
N-terminus
sp_v2.0_unigene64101 SustainPine v2.0 385
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 1.0e-28
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase 9.81047e-35
Internal
sp_v2.0_unigene69849 SustainPine v2.0 487
AutoFact: Ferritin n=1 Tax=Picea sitchensis RepID=C0PRI0_PICSI 3.0e-37
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chloroplast precursor 2.61377e-40
C-terminus
sp_v2.0_unigene74097 SustainPine v2.0 278
AutoFact: Ubiquitin-activating enzyme E1 n=2 Tax=Selaginella moellendorffii RepID=D8T5S9_SELML 3.0e-08
FL-Next: sp=Ubiquitin-activating enzyme E1 1; Triticum aestivum (Wheat). 0.0
Blast2go: ubiquitin-activating enzyme 8.31406e-10
N-terminus
sp_v2.0_unigene76478 SustainPine v2.0 321
AutoFact: Ubiquitin-activating enzyme E1 (Fragment) n=1 Tax=Vitis vinifera RepID=D7SJT2_VITVI 9.0e-35
FL-Next: sp=Ubiquitin-activating enzyme E1 2; Triticum aestivum (Wheat). 0.0
Blast2go: ubiquitin-activating enzyme e1 1.74298e-34
Internal
sp_v2.0_unigene77494 SustainPine v2.0 518
AutoFact: PREDICTED: similar to cAMP response element-binding protein 5 n=1 Tax=Hydra magnipapillata RepID=UPI0001925AA1 2.0e-07
Blast2go: camp response element-binding protein 5 1.28271e-08
Coding
sp_v2.0_unigene78748 SustainPine v2.0 767
AutoFact: Herpes_BLLF1 multi-domain protein 9.0e-15
Coding
sp_v2.0_unigene81654 SustainPine v2.0 885
AutoFact: Ferritin n=1 Tax=Picea sitchensis RepID=C0PRI0_PICSI 0.0
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chloroplast precursor 0.0
N-terminus
sp_v2.0_unigene87806 SustainPine v2.0 261
AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 2.0e-23
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase 1.18612e-29
Internal
sp_v2.0_unigene88434 SustainPine v2.0 892
AutoFact: Herpes_BLLF1 multi-domain protein 7.0e-24
FL-Next: sp=DNA-directed RNA polymerase; Blastocystis hominis. 0.0
Blast2go: salivary glue protein sgs-4 1.16479e-11
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain