Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Pentatricopeptide repeat

Term: IPR002885  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene18010 SustainPine v2.0 592
• AutoFact: GTP binding protein n=3 Tax=Andropogoneae RepID=B6SXN2_MAIZE 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pentatricopeptide repeat-containing 3.46589e-32
Putative C-terminus
sp_v2.0_unigene18074 SustainPine v2.0 752
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana] emb|CAB77760.1| hypothetical protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
sp_v2.0_unigene18077 SustainPine v2.0 323
• AutoFact: Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pentatricopeptide repeat protein 0.0
C-terminus
sp_v2.0_unigene18114 SustainPine v2.0 1535
• AutoFact: trichome birefringence-like 13 protein [Arabidopsis thaliana] gb|AAD15463.1| hypothetical protein [Arabidopsis thaliana] gb|AAL75895.1| At2g14530/T13P21.9 [Arabidopsis thaliana] gb|AAM70553.1| At2g14530/T13P21.9 [Arabidopsis thaliana] gb|AEC06309.1| trich 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: uncharacterized protein 0.0
Complete
sp_v2.0_unigene18151 SustainPine v2.0 2292
• AutoFact: DUF1635 domain containing protein 7.0e-24
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
• Blast2go: protein 1.54593e-19
Complete
sp_v2.0_unigene18173 SustainPine v2.0 2385
• AutoFact: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Zea mays] sp|A1Y2B7.1|SGS3_MAIZE RecName: Full=Protein SUPPRESSOR OF GENE SILENCING 3 homolog; AltName: Full=Protein LEAFBLADELESS 1; AltName: Full=ZmSGS3 gb|ABH10613.1| leafbladeless1 [Zea mays] gb|ACN33294 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein suppressor of gene silencing 3-like 0.0
Putative Complete
sp_v2.0_unigene18184 SustainPine v2.0 1897
• AutoFact: glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gb|AEE79701.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
sp_v2.0_unigene18403 SustainPine v2.0 3032
• AutoFact: RNA-binding KH domain-containing protein [Arabidopsis thaliana] ref|NP_197031.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana] dbj|BAF00580.1| hypothetical protein [Arabidopsis thaliana] dbj|BAF01176.1| hypothetical protein [Arabidopsis 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: kh domain-containing protein at4g18375-like 0.0
Complete
sp_v2.0_unigene18461 SustainPine v2.0 383
• AutoFact: Pentatricopeptide, putative n=3 Tax=Oryza sativa RepID=Q10MA5_ORYSJ 2.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pentatricopeptide repeat-containing protein mitochondrial-like 9.96966e-16
C-terminus
sp_v2.0_unigene18566 SustainPine v2.0 842
• AutoFact: Pentatricopeptide repeat protein 79 (Fragment) n=2 Tax=Funariaceae RepID=F5CAE5_FUNHY 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pentatricopeptide repeat-containing protein at1g20230 0.0
Putative Complete
sp_v2.0_unigene18618 SustainPine v2.0 1441
• AutoFact: PLAC8 domain containing protein 9.0e-12
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
• Blast2go: plac8 family protein 0.0
C-terminus
sp_v2.0_unigene18752 SustainPine v2.0 875
• AutoFact: DUF296 multi-domain protein 4.0e-12
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: dna-binding protein escarola-like 1.62791e-09
C-terminus
sp_v2.0_unigene18755 SustainPine v2.0 1653
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SWE4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pentatricopeptide repeat-containing protein at4g38150-like 0.0
Complete
sp_v2.0_unigene18864 SustainPine v2.0 404
• AutoFact: Tetratricopeptide-like helical n=1 Tax=Medicago truncatula RepID=Q1SN04_MEDTR 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pentatricopeptide repeat-containing protein 1.96182e-44
Internal
sp_v2.0_unigene18879 SustainPine v2.0 589
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06244.1| pentatricopeptide repe 6.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pentatricopeptide repeat-containing protein 1.12104e-44
Internal
sp_v2.0_unigene18959 SustainPine v2.0 292
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: mitochondrial editing factor 22 1.32941e-21
C-terminus
sp_v2.0_unigene19037 SustainPine v2.0 355
• AutoFact: Pentatricopeptide repeat protein 43 n=1 Tax=Funaria hygrometrica RepID=F5CAD7_FUNHY 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pentatricopeptide repeat-containing protein 2.47923e-20
Internal
sp_v2.0_unigene19070 SustainPine v2.0 691
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03560, mitochondrial; Flags: Precursor gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana] gb|AEE 8.0e-16
• FL-Next: sp=Pentatricopeptide repeat-containing protein At1g03560, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: pentatricopeptide repeat-containing protein 2.3025e-15
C-terminus
sp_v2.0_unigene19097 SustainPine v2.0 356
• AutoFact: Pentatricopeptide repeat protein 79 (Fragment) n=2 Tax=Funariaceae RepID=F5CAE5_FUNHY 3.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pentatricopeptide repeat protein 7.54413e-40
Internal
sp_v2.0_unigene19193 SustainPine v2.0 1501
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q94JX6.2|PP391_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18390, mitochondrial; Flags: Precursor gb|AED92549.1| pentatricopeptide repeat-containing protein [Ara 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pentatricopeptide repeat-containing 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain