Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene71475 SustainPine v2.0 394
AutoFact: OSIGBa0093M15.5 protein n=1 Tax=Oryza sativa RepID=Q01MK0_ORYSA 1.0e-25
FL-Next: tr=OSIGBa0093M15.5 protein; Oryza sativa (Rice). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 2.01081e-29
Internal
sp_v2.0_unigene71989 SustainPine v2.0 333
AutoFact: Unassigned protein
FL-Next: tr=H0515C11.8 protein; Oryza sativa (Rice). 0.0
Blast2go: retrotransposon unclassified 6.42801e-12
Putative C-terminus
sp_v2.0_unigene72040 SustainPine v2.0 304
AutoFact: Putative reverse-transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9T0B7_ARATH 4.0e-16
FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Blast2go: pol polyprotein 5.31977e-20
Putative N-terminus
sp_v2.0_unigene72153 SustainPine v2.0 323
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB 9.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 1.1108e-37
Internal
sp_v2.0_unigene72221 SustainPine v2.0 384
AutoFact: Putative copia-type polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q9FWI2_ORYSJ 4.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 9.65682e-35
N-terminus
sp_v2.0_unigene72230 SustainPine v2.0 303
AutoFact: Putative retrotransposon protein n=1 Tax=Phyllostachys edulis RepID=D3IVQ8_9POAL 4.0e-18
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon ty3-gypsy subclass 3.48472e-21
N-terminus
sp_v2.0_unigene72240 SustainPine v2.0 380
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 9.19217e-25
C-terminus
sp_v2.0_unigene72394 SustainPine v2.0 419
AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 4.0e-25
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon unclassified 7.22843e-25
Putative C-terminus
sp_v2.0_unigene72401 SustainPine v2.0 366
AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 5.0e-24
FL-Next: tr=Putative uncharacterized protein orf215; Nicotiana tabacum (Common tobacco). Mitochondrion. 0.0
Blast2go: retrotransposon ty3-gypsy subclass 1.01887e-28
Internal
sp_v2.0_unigene72627 SustainPine v2.0 262
AutoFact: Polyprotein n=1 Tax=Zea mays RepID=A5JSC4_MAIZE 8.0e-18
FL-Next: tr=Putative polyprotein; Oryza sativa (Rice). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 5.79546e-19
Internal
sp_v2.0_unigene72636 SustainPine v2.0 247
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein n=1 Tax=Medicago truncatula RepID=Q2HW87_MEDTR 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 1.61936e-10
Internal
sp_v2.0_unigene72641 SustainPine v2.0 280
AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q5W683_ORYSJ 1.0e-16
FL-Next: tr=Putative polyprotein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: uncharacterized protein loc100799454 4.2067e-21
Internal
sp_v2.0_unigene72643 SustainPine v2.0 399
AutoFact: Putative retrotransposon polyprotein n=1 Tax=Ipomoea batatas RepID=Q5MG92_IPOBA 4.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein partial 8.25498e-25
Putative Complete
sp_v2.0_unigene72859 SustainPine v2.0 297
AutoFact: peru 2 [Solanum peruvianum] 4.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: receptor-like protein kinase 3.97998e-15
Internal
sp_v2.0_unigene73100 SustainPine v2.0 339
AutoFact: Putative retrotransposon protein, identical n=2 Tax=Solanum demissum RepID=Q6L3S2_SOLDE 2.0e-29
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 2.72557e-38
Putative N-terminus
sp_v2.0_unigene73137 SustainPine v2.0 456
AutoFact: glycerophosphoryl diester phosphodiesterase 2 precursor-like [Oryza sativa Japonica Group] 9.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein seuss-like 5 3.50757e-33
Putative N-terminus
sp_v2.0_unigene73151 SustainPine v2.0 397
AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 1.0e-31
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: reverse transcriptase 2.99034e-37
Putative N-terminus
sp_v2.0_unigene73217 SustainPine v2.0 323
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 2.0e-36
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 3.34295e-36
Internal
sp_v2.0_unigene73233 SustainPine v2.0 218
AutoFact: polyprotein [Candida glabrata] 3.0e-18
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: gag-pol polyprotein 1.18877e-21
C-terminus
sp_v2.0_unigene73307 SustainPine v2.0 404
AutoFact: Gag-pol polyprotein n=1 Tax=Silene latifolia RepID=E7BQD5_SILLA 6.0e-38
FL-Next: tr=Integrase; Silene latifolia (White campion) (Bladder campion). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain