Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene60061 SustainPine v2.0 472
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
sp_v2.0_unigene60709 SustainPine v2.0 862
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: retrotransposon unclassified 0.0
C-terminus
sp_v2.0_unigene61524 SustainPine v2.0 1343
AutoFact: COP9 signalosome complex subunit 4 [Arabidopsis thaliana] sp|Q8L5U0.2|CSN4_ARATH RecName: Full=COP9 signalosome complex subunit 4; Short=AtS4; Short=Signalosome subunit 4; AltName: Full=Constitutive photomorphogenesis protein 8; AltName: Full=Protein FUSC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cop9 signalosome complex subunit 4 0.0
Complete
sp_v2.0_unigene61551 SustainPine v2.0 537
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 5.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 2.06058e-37
Internal
sp_v2.0_unigene61584 SustainPine v2.0 692
AutoFact: RVT_1 domain containing protein 8.0e-09
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: uncharacterized protein loc100259900 0.0
N-terminus
sp_v2.0_unigene61924 SustainPine v2.0 860
AutoFact: Ferritin n=1 Tax=Picea sitchensis RepID=B8LPN3_PICSI 0.0
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ferritin 1a 0.0
C-terminus
sp_v2.0_unigene62122 SustainPine v2.0 427
AutoFact: Early response to drought 3 (Fragment) n=8 Tax=Pinus RepID=B2CBY9_PINRA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: early response to drought 3 0.0
Internal
sp_v2.0_unigene62182 SustainPine v2.0 662
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCB7_POPTR 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100854171 2.05991e-43
Internal
sp_v2.0_unigene62220 SustainPine v2.0 257
AutoFact: Putative polyprotein n=2 Tax=Oryza sativa Japonica Group RepID=Q851Y3_ORYSJ 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: histone deacetylase 1.24551e-16
N-terminus
sp_v2.0_unigene62897 SustainPine v2.0 660
AutoFact: Contains similarity to gb|Y13720 Hap2a transcription factor from Arabidopsis thaliana 9.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear transcription factor y subunit a-7 0.0
Internal
sp_v2.0_unigene62938 SustainPine v2.0 568
AutoFact: S-domain class receptor-like kinase3 [Zea mays] emb|CAA09029.1| S-domain receptor-like protein kinase [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene62988 SustainPine v2.0 669
AutoFact: Beta-galactosidase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SWF1_VITVI 0.0
FL-Next: sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: beta-galactosidase 10 0.0
Internal
sp_v2.0_unigene63114 SustainPine v2.0 487
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 0.0
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: ac090485_10 retroelement 0.0
N-terminus
sp_v2.0_unigene63175 SustainPine v2.0 542
AutoFact: receptor-like protein kinase 1 [Glycine max] 0.0
FL-Next: tr=Receptor protein kinase; Pinus sylvestris (Scots pine). 0.0
Blast2go: receptor-like protein kinase 0.0
Internal
sp_v2.0_unigene63440 SustainPine v2.0 541
AutoFact: Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE 1.99993e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 3.50829e-41
Putative N-terminus
sp_v2.0_unigene63652 SustainPine v2.0 398
AutoFact: Heat shock protein 90 kDa (Fragment) n=2 Tax=Pseudotsuga RepID=C6F908_PSEMZ 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heat shock protein 90 kda 0.0
C-terminus
sp_v2.0_unigene63777 SustainPine v2.0 1066
AutoFact: Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL 0.0
FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: leucine-rich repeat receptor-like protein kinase 0.0
C-terminus
sp_v2.0_unigene63835 SustainPine v2.0 475
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_93.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TQZ5_VITVI 5.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: fk506-binding protein 0.0
N-terminus
sp_v2.0_unigene63886 SustainPine v2.0 725
AutoFact: NXRV092_H05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV092_H05 5' similar to Arabidopsis thaliana sequence At2g13930 putative retroelement pol polyprotein see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence. 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: hypothetical protein VITISV_004415 [Vitis vinifera] 0.0
Internal
sp_v2.0_unigene64089 SustainPine v2.0 713
AutoFact: cytochrome P450 [Pyrus communis] 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cytochrome p450 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain