Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Zinc finger, RING-type, conserved site

Term: IPR017907  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene6974 SustainPine v2.0 2150
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974453.1| RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974454.1| RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001190122.1| RING/U-box domain-con 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc c3hc4 type family protein 0.0
Complete
sp_v2.0_unigene7010 SustainPine v2.0 2018
AutoFact: cellulose synthase 6 [Populus tremuloides] 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: cellulose synthase 0.0
C-terminus
sp_v2.0_unigene7228 SustainPine v2.0 1647
AutoFact: RING-H2 finger protein ATL1M, putative n=1 Tax=Ricinus communis RepID=B9T6E5_RICCO 3.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring-h2 finger protein atl3c 0.0
Complete
sp_v2.0_unigene7231 SustainPine v2.0 1716
AutoFact: peroxin 10 [Arabidopsis thaliana] sp|Q9SYU4.1|PEX10_ARATH RecName: Full=Peroxisome biogenesis factor 10; AltName: Full=PER10; AltName: Full=Peroxin-10; AltName: Full=Peroxisomal biogenesis factor 10; Short=AtPEX10; Short=AthPEX10; AltName: Full=Peroxisome 0.0
FL-Next: sp=Peroxisome biogenesis factor 10; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: peroxisome biogenesis factor 10-like 0.0
Complete
sp_v2.0_unigene7314 SustainPine v2.0 414
AutoFact: ubiquitin-protein ligase RNF5 [Arabidopsis thaliana] gb|AAC17085.1| putative RING zinc finger protein [Arabidopsis thaliana] gb|AAP40387.1| putative RING zinc finger protein [Arabidopsis thaliana] gb|AAP40507.1| putative RING zinc finger protein [Arabidop 4.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring finger protein 0.0
N-terminus
sp_v2.0_unigene7344 SustainPine v2.0 464
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_3.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TKE6_VITVI 3.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein breast cancer susceptibility 1 homolog 1.18593e-28
Putative N-terminus
sp_v2.0_unigene7354 SustainPine v2.0 1147
AutoFact: Cellulose synthase n=1 Tax=Pinus radiata RepID=Q4VWW7_PINRA 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: cellulose synthase a catalytic subunit 3 0.0
C-terminus
sp_v2.0_unigene7442 SustainPine v2.0 1764
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001078409.1| RING/U-box domain-containing protein [Arabidopsis thaliana] emb|CAA19684.1| putative protein [Arabidopsis thaliana] emb|CAB78969.1| putative protein [Arabidopsis thaliana] gb| 7.00649e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene7569 SustainPine v2.0 1609
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized protein At4g10930; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene7664 SustainPine v2.0 606
AutoFact: Zinc finger, RING-type n=1 Tax=Medicago truncatula RepID=A2Q4Q8_MEDTR 4.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring finger protein 1.67315e-42
Putative N-terminus
sp_v2.0_unigene7805 SustainPine v2.0 1541
AutoFact: pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport 1.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: abscisic acid receptor pyl4 0.0
Complete
sp_v2.0_unigene7966 SustainPine v2.0 1748
AutoFact: FERONIA receptor-like kinase [Cardamine flexuosa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: feronia receptor-like kinase 0.0
C-terminus
sp_v2.0_unigene8064 SustainPine v2.0 1371
AutoFact: copine-like protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase rglg1-like 0.0
C-terminus
sp_v2.0_unigene8250 SustainPine v2.0 3080
AutoFact: ubiquitin-protein ligase RNF14 [Arabidopsis thaliana] gb|AAF81330.1|AC007767_10 Contains similarity to ring finger protein 14 from Homo sapiens gb|NM_004290. It contains an IBR domain PF|01485 [Arabidopsis thaliana] gb|AAG60174.1|AC084110_7 hypothetical p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring finger 0.0
Complete
sp_v2.0_unigene8509 SustainPine v2.0 768
AutoFact: dehydrodolichyl diphosphate synthase 2 [Arabidopsis thaliana] sp|Q56Y11.2|DDPS2_ARATH RecName: Full=Dehydrodolichyl diphosphate synthase 2; Short=Dedol-PP synthase 2 dbj|BAA97345.1| unnamed protein product [Arabidopsis thaliana] gb|ACI31313.1| At5g58770 [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
sp_v2.0_unigene8575 SustainPine v2.0 1077
AutoFact: putative BRCT domain-containing protein [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein breast cancer susceptibility 1 homolog 0.0
C-terminus
sp_v2.0_unigene8756 SustainPine v2.0 3811
AutoFact: Chromo domain protein, putative n=1 Tax=Ricinus communis RepID=B9RDU3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent helicase brm-like 0.0
Putative Complete
sp_v2.0_unigene8865 SustainPine v2.0 722
AutoFact: SNF2 family DNA-dependent ATPase (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TTS1_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromodomain-helicase-dna-binding protein 2-like 0.0
Putative N-terminus
sp_v2.0_unigene8942 SustainPine v2.0 1173
AutoFact: TED3; TED3 (REVERSAL OF THE DET PHENOTYPE 3); protein binding / zinc ion binding; K06664 peroxin-2 0.0
FL-Next: sp=Peroxisome biogenesis protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene8964 SustainPine v2.0 1400
AutoFact: receptor protein kinase-like [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable lrr receptor-like serine threonine-protein kinase at1g06840-like 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain