Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene77024 SustainPine v2.0 460
AutoFact: Cellulose synthase n=2 Tax=rosids RepID=B9HA33_POPTR 0.0
FL-Next: tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine). 0.0
Blast2go: cellulose synthase 0.0
Internal
sp_v2.0_unigene77427 SustainPine v2.0 198
AutoFact: WD-repeat protein, putative 2.0e-17
FL-Next: sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: topless-related protein 4-like 8.87788e-22
Internal
sp_v2.0_unigene77476 SustainPine v2.0 355
AutoFact: coatomer alpha subunit-like protein [Lotus japonicus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene77646 SustainPine v2.0 415
AutoFact: Flap endonuclease-1, putative n=1 Tax=Ricinus communis RepID=B9RFS3_RICCO 2.0e-07
FL-Next: sp=Flap endonuclease 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: flap endonuclease- 2.84276e-08
C-terminus
sp_v2.0_unigene77685 SustainPine v2.0 466
AutoFact: cellulose synthase BoCesA4 [Bambusa oldhamii] 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: cellulose synthase 0.0
Internal
sp_v2.0_unigene77744 SustainPine v2.0 308
AutoFact: Unassigned protein
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
Blast2go: wd repeat-containing 1.21632e-29
Internal
sp_v2.0_unigene77880 SustainPine v2.0 415
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AEC07791.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 1.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene78176 SustainPine v2.0 203
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transducin wd-40 repeat-containing protein 2.45615e-17
Misassembled
sp_v2.0_unigene78194 SustainPine v2.0 304
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 5.14277e-43
Putative C-terminus
sp_v2.0_unigene78462 SustainPine v2.0 330
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: wd repeat-containing protein 1.53686e-12
Putative C-terminus
sp_v2.0_unigene78558 SustainPine v2.0 464
AutoFact: Eukaryotic translation initiation factor 5A 2 n=3 Tax=Picea RepID=Q3ZDK4_PICAB 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 5a1 0.0
N-terminus
sp_v2.0_unigene79122 SustainPine v2.0 337
AutoFact: LUG; LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor 2.0e-19
FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: transcriptional corepressor leunig-like 9.56272e-21
Putative C-terminus
sp_v2.0_unigene79136 SustainPine v2.0 461
AutoFact: Eukaryotic initiation factor 4A-3 n=8 Tax=Embryophyta RepID=IF4A3_NICPL 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic initiation factor 0.0
C-terminus
sp_v2.0_unigene79257 SustainPine v2.0 195
AutoFact: Coatomer alpha subunit n=1 Tax=Hordeum vulgare subsp. vulgare RepID=Q6RYF4_HORVD 9.0e-10
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: coatomer alpha 1.10209e-19
Internal
sp_v2.0_unigene79446 SustainPine v2.0 1345
AutoFact: Phosphoenolpyruvate carboxykinase (ATP) [Dokdonia donghaensis MED134] gb|EAQ39883.1| Phosphoenolpyruvate carboxykinase (ATP) [Dokdonia donghaensis MED134] 3.0e-06
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100244219 1.19895e-40
Putative C-terminus
sp_v2.0_unigene79454 SustainPine v2.0 386
AutoFact: RecName: Full=Eukaryotic translation initiation factor 5A; Short=eIF-5A emb|CAB65463.1| translation initiation factor 5A precursor protein (eIF-5A) [Senecio vernalis] 5.99756e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene79475 SustainPine v2.0 659
AutoFact: Cellulose synthase n=13 Tax=core eudicotyledons RepID=B9IKV7_POPTR 0.0
FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
Blast2go: cellulose synthase catalytic subunit 0.0
Internal
sp_v2.0_unigene79681 SustainPine v2.0 636
AutoFact: Guanine nucleotide-binding protein subunit beta-1 n=9 Tax=core eudicotyledons RepID=GBB1_TOBAC 2.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: guanine nucleotide-binding protein subunit beta 0.0
Internal
sp_v2.0_unigene79703 SustainPine v2.0 530
AutoFact: Peroxisomal targeting signal type 2 receptor n=2 Tax=Solanaceae RepID=Q84XK6_SOLLC 5.60519e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene80009 SustainPine v2.0 951
AutoFact: vacuolar protein sorting-associated protein 32-2 [Arabidopsis thaliana] ref|NP_001078468.1| vacuolar protein sorting-associated protein 32-2 [Arabidopsis thaliana] sp|Q9SZE4.1|VP322_ARATH RecName: Full=Vacuolar protein sorting-associated protein 32 homolo 1.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: vacuolar protein sorting-associated protein 32-2 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain