Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: WD40 repeat

Term: IPR001680  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene44501 SustainPine v2.0 403
AutoFact: NXSI_144_B01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_144_B01 5' similar to Arabidopsis thaliana sequence At2g46560 hypothetical protein see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence. 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: transducin family protein 4.95412e-34
Internal
sp_v2.0_unigene44524 SustainPine v2.0 315
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: transducin wd40 domain-containing protein 1.10558e-30
Internal
sp_v2.0_unigene44998 SustainPine v2.0 521
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76753.1| pentatric 1.96182e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing protein 0.0
Internal
sp_v2.0_unigene45101 SustainPine v2.0 591
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|ABH04482.1| At2g16405 [Arabidopsis thaliana] gb|AEC06494.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 13-like 0.0
Putative N-terminus
sp_v2.0_unigene45330 SustainPine v2.0 630
AutoFact: WD40 domain-containing protein [Arabidopsis thaliana] gb|AAC14498.1| En/Spm-like transposon protein [Arabidopsis thaliana] gb|AAT71958.1| At2g26490 [Arabidopsis thaliana] gb|AAU95436.1| At2g26490 [Arabidopsis thaliana] gb|AEC07844.1| WD40 domain-containin 6.0e-38
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: f-box and wd40 domain 0.0
Putative C-terminus
sp_v2.0_unigene45421 SustainPine v2.0 640
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_46.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7UCV4_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: nucleotide binding 0.0
Internal
sp_v2.0_unigene45471 SustainPine v2.0 369
AutoFact: Unassigned protein
FL-Next: tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: vascular protein 0.0
N-terminus
sp_v2.0_unigene45871 SustainPine v2.0 457
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: wd repeat-containing protein 91-like 0.0
N-terminus
sp_v2.0_unigene45890 SustainPine v2.0 298
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76753.1| pentatric 8.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pentatricopeptide repeat-containing 4.51406e-31
Internal
sp_v2.0_unigene46436 SustainPine v2.0 382
AutoFact: osmosensor histidine-aspartate kinase [Populus x canadensis] 0.0
FL-Next: sp=Histidine kinase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: histidine kinase osmosensor protein 0.0
Internal
sp_v2.0_unigene46677 SustainPine v2.0 503
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RVD7_RICCO 9.94922e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat and hmg-box dna-binding protein 1-like 0.0
C-terminus
sp_v2.0_unigene47317 SustainPine v2.0 311
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AED95293.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 4.0e-27
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: transducin family protein 1.11467e-33
Internal
sp_v2.0_unigene47608 SustainPine v2.0 727
AutoFact: Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9T585_PHYPA 3.99931e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene47756 SustainPine v2.0 405
AutoFact: Glycine-rich protein n=4 Tax=Arabidopsis RepID=F4JV81_ARATH 2.0e-11
FL-Next: tr=Glycine-rich protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: glycine-rich protein 2.69624e-11
Internal
sp_v2.0_unigene48340 SustainPine v2.0 337
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RWJ4_RICCO 7.0e-27
FL-Next: sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: transcriptional corepressor leunig 1.45876e-33
Internal
sp_v2.0_unigene48464 SustainPine v2.0 257
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v2.0_unigene48689 SustainPine v2.0 441
AutoFact: Vacuolar protein sorting vps41, putative n=1 Tax=Ricinus communis RepID=B9SCM9_RICCO 0.0
FL-Next: sp=Vacuolar protein sorting-associated protein 41 homolog; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Blast2go: vacuolar protein sorting-associated protein 41 homolog 0.0
Internal
sp_v2.0_unigene49232 SustainPine v2.0 251
AutoFact: Katanin p80 WD40 repeat-containing subunit B1-1 [Arabidopsis thaliana] sp|Q8H0T9.3|KTNB1_ARATH RecName: Full=Katanin p80 WD40 repeat-containing subunit B1 homolog 1 gb|AAN72064.1| putative protein [Arabidopsis thaliana] gb|AED93166.1| Katanin p80 WD40 rep 6.0e-08
FL-Next: sp=Katanin p80 WD40 repeat-containing subunit B1 homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v2.0_unigene49504 SustainPine v2.0 649
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] emb|CAB51411.1| putative protein [Arabidopsis thaliana] emb|CAB81228.1| putative protein [Arabidopsis thaliana] gb|AEE82991.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana 3.00004e-41
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: transducin family protein 0.0
Internal
sp_v2.0_unigene49652 SustainPine v2.0 214
AutoFact: Unassigned protein
FL-Next: tr=BWF1-like protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: bwf1-like protein 9.10246e-23
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain