Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: RNA recognition motif domain

Term: IPR000504  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene10389 SustainPine v2.0 1686
AutoFact: DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] ref|NP_001031930.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAM91576.1| putative protein [Arabidopsis thaliana] gb|AAP13437.1| At5g23590 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dnaj heat shock n-terminal domain-containing protein 0.0
Complete
sp_v2.0_unigene10664 SustainPine v2.0 2419
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.0e-07
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna recognition motif-containing protein 0.0
Complete
sp_v2.0_unigene10714 SustainPine v2.0 915
AutoFact: splicing factor 1 [Arabidopsis thaliana] ref|NP_851169.1| splicing factor 1 [Arabidopsis thaliana] ref|NP_001032055.1| splicing factor 1 [Arabidopsis thaliana] dbj|BAA97393.1| unnamed protein product [Arabidopsis thaliana] gb|AAN13087.1| unknown protein [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 1 0.0
Internal
sp_v2.0_unigene10715 SustainPine v2.0 1895
AutoFact: P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] ref|NP_001031270.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] ref|NP_001031271.1| P-loop containing nucleoside triphospha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: p-loop containing nucleoside triphosphate hydrolase-like protein 0.0
Putative Complete
sp_v2.0_unigene10720 SustainPine v2.0 1836
AutoFact: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9T1E0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: calmodulin binding 0.0
C-terminus
sp_v2.0_unigene10755 SustainPine v2.0 1172
AutoFact: Nuclear cap-binding protein subunit 2 n=3 Tax=Andropogoneae RepID=B6TL33_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear cap-binding protein 0.0
Complete
sp_v2.0_unigene10770 SustainPine v2.0 2578
AutoFact: Phytochrome A-associated F-box protein, putative n=1 Tax=Ricinus communis RepID=B9SAQ8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: phytochrome a-associated f-box protein 0.0
Putative Complete
sp_v2.0_unigene10807 SustainPine v2.0 870
AutoFact: glycine-rich RNA-binding protein [Physcomitrella patens] 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene10879 SustainPine v2.0 1915
AutoFact: CTC-interacting domain 9 protein [Arabidopsis thaliana] dbj|BAB01337.1| unnamed protein product [Arabidopsis thaliana] gb|AEE75527.1| CTC-interacting domain 9 protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ctc-interacting domain 8 protein 0.0
Complete
sp_v2.0_unigene10942 SustainPine v2.0 1639
AutoFact: MEI2-like protein 5 [Arabidopsis thaliana] ref|NP_849727.1| MEI2-like protein 5 [Arabidopsis thaliana] sp|Q8VWF5.1|AML5_ARATH RecName: Full=Protein MEI2-like 5; Short=AML5; AltName: Full=MEI2-like protein 5 gb|AAL32691.1| RNA-binding protein MEI2, putativ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein mei2-like 4-like 0.0
N-terminus
sp_v2.0_unigene11000 SustainPine v2.0 880
AutoFact: FCA gamma [Pisum sativum] 1.0e-17
FL-Next: Isoform Beta of Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA 0.0
Blast2go: flowering time control protein fca-like 1.49858e-21
N-terminus
sp_v2.0_unigene11007 SustainPine v2.0 1621
AutoFact: ATP-dependent peptidase, putative n=1 Tax=Ricinus communis RepID=B9RIL2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial-like 0.0
N-terminus
sp_v2.0_unigene11042 SustainPine v2.0 1144
AutoFact: pfam05691, Raffinose_syn, Raffinose synthase or seed inhibition protein Sip1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: raffinose synthase-like protein 0.0
Putative C-terminus
sp_v2.0_unigene11098 SustainPine v2.0 595
AutoFact: U2-associated protein SR140 [Arabidopsis thaliana] gb|AAK25922.1|AF360212_1 unknown protein [Arabidopsis thaliana] gb|AAK64118.1| unknown protein [Arabidopsis thaliana] gb|AED93395.1| U2-associated protein SR140 [Arabidopsis thaliana] 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 1.25054e-19
N-terminus
sp_v2.0_unigene11203 SustainPine v2.0 2739
AutoFact: polypyrimidine tract-binding protein 2 [Arabidopsis thaliana] sp|Q9FGL9.1|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2 dbj|BAB08421.1| polypyrimidine tract-binding RNA transport protein-like [Arabidopsis thaliana] gb|AAU90050.1 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene11212 SustainPine v2.0 1696
AutoFact: RRM_1 domain containing protein 6.0e-05
FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: zinc finger ccch domain-containing protein 18-like 0.0
C-terminus
sp_v2.0_unigene11511 SustainPine v2.0 411
AutoFact: CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] emb|CAB75492.1| putative protein [Arabidopsis thaliana] gb|AEE78053.1| CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] 6.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ccr4-not transcription complex subunit 1.16942e-32
Internal
sp_v2.0_unigene11678 SustainPine v2.0 461
AutoFact: FAP multi-domain protein 2.0e-18
Coding
sp_v2.0_unigene11804 SustainPine v2.0 1471
AutoFact: pfam07002, Copine, Copine 6.99949e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase rglg2 0.0
Putative N-terminus
sp_v2.0_unigene11811 SustainPine v2.0 1293
AutoFact: Copper ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3E8_RICCO 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine arginine repetitive matrix protein 1 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain