Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Reverse transcriptase, RNA-dependent DNA polymerase

Term: IPR013103  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene24662 SustainPine v2.0 1250
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold 0.0
Putative Complete
sp_v2.0_unigene24667 SustainPine v2.0 554
AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 1.0e-22
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 3.60639e-26
C-terminus
sp_v2.0_unigene24697 SustainPine v2.0 882
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
Putative C-terminus
sp_v2.0_unigene24701 SustainPine v2.0 597
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 9.94922e-44
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
C-terminus
sp_v2.0_unigene24719 SustainPine v2.0 1044
AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Putative N-terminus
sp_v2.0_unigene24743 SustainPine v2.0 942
AutoFact: putative S-adenosylmethionine decarboxylase [Prunus dulcis] 2.0e-15
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: small uorf 8.54671e-20
Complete
sp_v2.0_unigene24868 SustainPine v2.0 1333
AutoFact: Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: xyloglucan endotransglucosylase hydrolase protein 9 0.0
Complete
sp_v2.0_unigene24970 SustainPine v2.0 1089
AutoFact: Rnase h, putative n=1 Tax=Ricinus communis RepID=B9S2M9_RICCO 0.0
FL-Next: sp=Small RNA degrading nuclease 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: small rna degrading nuclease 5-like 0.0
Putative C-terminus
sp_v2.0_unigene24992 SustainPine v2.0 1265
AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein argonaute 16-like 0.0
Internal
sp_v2.0_unigene25037 SustainPine v2.0 4080
AutoFact: Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7U6B4_VITVI 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative Complete
sp_v2.0_unigene25073 SustainPine v2.0 1318
AutoFact: amino acid kinase-like protein [Arabidopsis thaliana] gb|AAN12957.1| unknown protein [Arabidopsis thaliana] gb|AEE30713.1| amino acid kinase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: aspartate glutamate uridylate kinase family protein 0.0
Complete
sp_v2.0_unigene25114 SustainPine v2.0 777
AutoFact: Mitochondrial substrate carrier family protein [Arabidopsis thaliana] gb|AAO32062.1| mitochondrial basic amino acid carrier [Arabidopsis thaliana] gb|ABF85776.1| At2g33820 [Arabidopsis thaliana] gb|AEC08890.1| Mitochondrial substrate carrier family protei 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mitochondrial substrate carrier family protein s-like 0.0
N-terminus
sp_v2.0_unigene25120 SustainPine v2.0 1402
AutoFact: prolyl 4-hydroxylase [Dianthus caryophyllus] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: prolyl 4-hydroxylase subunit alpha-1-like 0.0
Complete
sp_v2.0_unigene25166 SustainPine v2.0 1848
AutoFact: S-adenosylmethionine decarboxylase proenzyme n=2 Tax=Picea sitchensis RepID=B8LQ15_PICSI 0.0
FL-Next: sp=S-adenosylmethionine decarboxylase proenzyme; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: s-adenosylmethionine decarboxylase 0.0
Complete
sp_v2.0_unigene25309 SustainPine v2.0 1392
AutoFact: [R] COG1272 Predicted membrane protein, hemolysin III homolog 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: adipor-like receptor cg5315-like 0.0
N-terminus
sp_v2.0_unigene25466 SustainPine v2.0 1327
AutoFact: Laccase n=1 Tax=Pinus taeda RepID=Q9AUI2_PINTA 0.0
FL-Next: tr=Laccase; Pinus taeda (Loblolly pine). 0.0
Blast2go: protein 0.0
C-terminus
sp_v2.0_unigene25494 SustainPine v2.0 559
AutoFact: Putative S-domain receptor-like protein kinase n=1 Tax=Oryza sativa Japonica Group RepID=Q9LE23_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
sp_v2.0_unigene25541 SustainPine v2.0 1231
AutoFact: Cinnamoyl CoA reductase n=5 Tax=Populus trichocarpa RepID=B9GMB5_POPTR 0.0
FL-Next: tr=Cinnamoyl-CoA reductase; Pinus taeda (Loblolly pine). 0.0
Blast2go: cinnamoyl reductase 0.0
Complete
sp_v2.0_unigene25737 SustainPine v2.0 415
AutoFact: putative retroelement pol polyprotein [Arabidopsis thaliana] 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 3.34794e-24
Internal
sp_v2.0_unigene25741 SustainPine v2.0 2445
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974832.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAM97093.1| RING finger-like protein [Arabidopsis thaliana] gb|AAT47817.1| At5g24870 [Arabidopsis thaliana] gb|AED9 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring u-box domain-containing protein 1.4013e-45
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain